1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tgaaattggacagaaattgcgttaatttagaatttgagttgatctcaatttatagtttctgttttactgatgatcaaaaatcggtttgattttattatagGGAACAAGCTGCCATTAGATTGAAAGATGAAAAAATTGAGAAGCTGGAGGAGGAG
species | Oryza sativa |
transcript | LOC_Os02g09060.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GTAAAAAACATGGAGATGTGGAGGGAGAGAATTCAAAAAGTAAAAGAAAG GGAACAAGCTGCCATTAGATTGAAAGATGAAAAAATTGAGAAGCTGGAGGAEST: gi|88838045|gb|CI372613.1|CI372613
genomic: GTAAAAAACATGGAGATGTGGAGGGAGAGAATTCAAAAAGTAAAAGAAAGgtattttctc ... tttattatagGGAACAAGCTGCCATTAGATTGAAAGATGAAAAAATTGAGAAGCTGGAGGA
EST: GTAAAAAACATGGAGATGTGGAGGGAGAGAATTCAAAAAGTAAAAGAAAG GGAACAAGCTGCCATTAGATTGAAAGATGAAAAAATTGAGAAGCTGGAGGAEST: gi|86483356|gb|CI125989.1|CI125989
genomic: GTAAAAAACATGGAGATGTGGAGGGAGAGAATTCAAAAAGTAAAAGAAAGgtattttctc ... tttattatagGGAACAAGCTGCCATTAGATTGAAAGATGAAAAAATTGAGAAGCTGGAGGA
EST: GTAAAAAACATGGAGATGTGGAGGGAAAGAATTCAAAAAGTAAAAGAAAG GGAACAAGCTGCCATTAGATTGAAAGATGAAAAAATTGAGAAGCTGGAGGAEST: gi|88548190|gb|CI476539.1|CI476539
genomic: GTAAAAAACATGGAGATGTGGAGGGAGAGAATTCAAAAAGTAAAAGAAAGgtattttctc ... tttattatagGGAACAAGCTGCCATTAGATTGAAAGATGAAAAAATTGAGAAGCTGGAGGA
EST: GTAAAAAACATGGAGATGTGGAGGGAGAGAATTCAAAAAGTAAAAGAAAG GGAACAAGCTGCCATTAGATTGAAAGATGAAAAAATTGAGAAGCTGGAGGAEST: gi|88554522|gb|CI484709.1|CI484709
genomic: GTAAAAAACATGGAGATGTGGAGGGAGAGAATTCAAAAAGTAAAAGAAAGgtattttctc ... tttattatagGGAACAAGCTGCCATTAGATTGAAAGATGAAAAAATTGAGAAGCTGGAGGA
EST: AGGGAGAGAATTCAAAAAGTAAAAGAAAG GGAACAAGCTGCCATTAGATTGAAAGATGAAAAAATTGAGAAGCTGGAGGAEST: gi|88218548|gb|CI218397.1|CI218397
genomic: AGGGAGAGAATTCAAAAAGTAAAAGAAAGgtattttctc ... tttattatagGGAACAAGCTGCCATTAGATTGAAAGATGAAAAAATTGAGAAGCTGGAGGA
EST: GTAAAAAACATGGAGATGTGGAGGGAGAGAATTCAAAAAGTAAAAGAAAG GGAACAAGCTGCCATTAGATTGAAAGATGAAAAAATTGAGAAGCTGGAGGAEST: gi|86500028|gb|CI142661.1|CI142661
genomic: GTAAAAAACATGGAGATGTGGAGGGAGAGAATTCAAAAAGTAAAAGAAAGgtattttctc ... tttattatagGGAACAAGCTGCCATTAGATTGAAAGATGAAAAAATTGAGAAGCTGGAGGA
EST: GTAAAAAACATGGAGATGTGGAGGGAGAGAATTCAAAAAGTAAAAGAAAG GGAACAAGCTGCCATTAGATTGAAAGATGAAAAAATTGAGAAGCTGGAGGAEST: gi|88544584|gb|CI472696.1|CI472696
genomic: GTAAAAAACATGGAGATGTGGAGGGAGAGAATTCAAAAAGTAAAAGAAAGgtattttctc ... tttattatagGGAACAAGCTGCCATTAGATTGAAAGATGAAAAAATTGAGAAGCTGGAGGA
EST: CAAAAAGTAAAAGAAAG GGAACAAGCTGCCATTAGATTGAAAGATGAAAAAATTGAGAAGCTGGAGGAEST: gi|88535090|gb|CI463864.1|CI463864
genomic: CAAAAAGTAAAAGAAAGgtattttctc ... tttattatagGGAACAAGCTGCCATTAGATTGAAAGATGAAAAAATTGAGAAGCTGGAGGA
EST: AAAACATGGAGATGTGGAGGGAGAGAATTCAAAAAGTAAAAGAAAG GGAACAAGCTGCCATTAGATTGAAAGATGAAAAAATTGAGAAGCTGGAGGAEST: gi|88259444|gb|CI363737.1|CI363737
genomic: AAAACATGGAGATGTGGAGGGAGAGAATTCAAAAAGTAAAAGAAAGgtattttctc ... tttattatagGGAACAAGCTGCCATTAGATTGAAAGATGAAAAAATTGAGAAGCTGGAGGA
EST: GTAAAAAACATGGAGATGTGGAGGGAGAGAATTCAAAAAGTAAAAGAAAG GGAACAAGCTGCCATTAGATTGAAAGATGAAAAAATTGAGAAGCTGGAGGAEST: gi|29678198|gb|CB674473.1|CB674473
genomic: GTAAAAAACATGGAGATGTGGAGGGAGAGAATTCAAAAAGTAAAAGAAAGgtattttctc ... tttattatagGGAACAAGCTGCCATTAGATTGAAAGATGAAAAAATTGAGAAGCTGGAGGA
EST: GTAAAAAACATGGAGATGTGGAGGGAGAGAATTCAAAAAGTAAAAGAAAG GGAACAAGCTGCCATTAGATTGAAAGATGAAAAAATTGAGAAGCTGGAGGAEST: gi|40492104|gb|BX900098.1|BX900098
genomic: GTAAAAAACATGGAGATGTGGAGGGAGAGAATTCAAAAAGTAAAAGAAAGgtattttctc ... tttattatagGGAACAAGCTGCCATTAGATTGAAAGATGAAAAAATTGAGAAGCTGGAGGA
EST: GTTAAAAACATGGAGATGTGGAGGGAGAGAATTCAAAAAGTAAAAGAAAG GGAACAAGCTGCCATTAGATTGAAAGATGAAAAAATTGAGAAGCTGGAGGAEST: gi|86881135|gb|CI339296.1|CI339296
genomic: GTAAAAAACATGGAGATGTGGAGGGAGAGAATTCAAAAAGTAAAAGAAAGgtattttctc ... tttattatagGGAACAAGCTGCCATTAGATTGAAAGATGAAAAAATTGAGAAGCTGGAGGA
EST: GTAAAAAACATGGAGATGTGGAGGGAGAGAATTCAAAAAGTAAAAGAAAG GGAACAAGCTGCCATTAGATTGAAAGATGAAAAAATTGAGAAGCTGGAGGAEST: gi|86426354|gb|CI071451.1|CI071451
genomic: GTAAAAAACATGGAGATGTGGAGGGAGAGAATTCAAAAAGTAAAAGAAAGgtattttctc ... tttattatagGGAACAAGCTGCCATTAGATTGAAAGATGAAAAAATTGAGAAGCTGGAGGA
EST: GTAAAAAACATGGAGATGTGGAGGGAGAGAATTCAAAAAGTAAAAGAAAG GGAACAAGCTGCCATTAGATTGAAAGATGAAAAAATTGAGAAGCTGGAGGAEST: gi|86412826|gb|CI067231.1|CI067231
genomic: GTAAAAAACATGGAGATGTGGAGGGAGAGAATTCAAAAAGTAAAAGAAAGgtattttctc ... tttattatagGGAACAAGCTGCCATTAGATTGAAAGATGAAAAAATTGAGAAGCTGGAGGA
EST: NNNNNNNNCATGGAGATGTGGAGGGAGAGAATTCAAAAAGTAAAAGAAAG GGAACAAGCTGCCATTAGATTGAAAGATGAAAAAATTGAGAAGCTGGAGGAEST: gi|88527296|gb|CI455440.1|CI455440
genomic: -TAAAAAACATGGAGATGTGGAGGGAGAGAATTCAAAAAGTAAAAGAAAGgtattttctc ... tttattatagGGAACAAGCTGCCATTAGATTGAAAGATGAAAAAATTGAGAAGCTGGAGGA
EST: GGAGATNTGGAGGGAGAGAATTCAAAAAGTAAAAGAAAG GGAACAAGCTGCCATTAGATTGAAAGATGAAAAAATTGAGAAGCTGGAGGAEST: gi|88531440|gb|CI459916.1|CI459916
genomic: GGAGATGTGGAGGGAGAGAATTCAAAAAGTAAAAGAAAGgtattttctc ... tttattatagGGAACAAGCTGCCATTAGATTGAAAGATGAAAAAATTGAGAAGCTGGAGGA
EST: GTAAAAAACATGGAGATGTGGAGGGAGAGAATTCAAAAAGTAAAAGAAAG GGAACAAGCTGCCATTAGATTGAAAGATGAAAAAATTGAGAAGCTGGAGGAEST: gi|88275435|gb|CI395286.1|CI395286
genomic: GTAAAAAACATGGAGATGTGGAGGGAGAGAATTCAAAAAGTAAAAGAAAGgtattttctc ... tttattatagGGAACAAGCTGCCATTAGATTGAAAGATGAAAAAATTGAGAAGCTGGAGGA
EST: GTAAAAAACATGGAGATGTGGAGGGAGAGAATTCAAAAAGTAAAAGAAAG GG-ACAAGCTGCCATTAGATTGAAAGATGAAAAAATTGAGAAGCTGGAGGAEST: gi|89175817|gb|CI042838.1|CI042838
genomic: GTAAAAAACATGGAGATGTGGAGGGAGAGAATTCAAAAAGTAAAAGAAAGgtattttctc ... tttattatagGGAACAAGCTGCCATTAGATTGAAAGATGAAAAAATTGAGAAGCTGGAGGA
EST: GTAAAAAACATGGAGATGTGGAGGGAGAGAATTCAAAAAGTAAAAGAAAG GGAACAAGCTGCCATTAGATTGAAAGATGAAAAAATTGAGAAGCTGGAGGAEST: gi|88226693|gb|CI226609.1|CI226609
genomic: GTAAAAAACATGGAGATGTGGAGGGAGAGAATTCAAAAAGTAAAAGAAAGgtattttctc ... tttattatagGGAACAAGCTGCCATTAGATTGAAAGATGAAAAAATTGAGAAGCTGGAGGA
EST: GTAAAAAACATGGAGATGTGGAGGGAGAGAATTCAAAAAGTAAAAGAAAG GGAACAAGCTGCCATTAGATTGAAAGATGAAAAAATTGAGAAGCTGGAGGAEST: gi|88218295|gb|CI218144.1|CI218144
genomic: GTAAAAAACATGGAGATGTGGAGGGAGAGAATTCAAAAAGTAAAAGAAAGgtattttctc ... tttattatagGGAACAAGCTGCCATTAGATTGAAAGATGAAAAAATTGAGAAGCTGGAGGA
EST: GTAAAAAACATGGAGATGTGGAGGGAGAGAATTCAAAAAGTAAAAGAAAG GGAACAAGCTGCCATTAGATTGAAAGATGTAAAAATTGAGAAGCTGGAGGAEST: gi|86543524|gb|CI183730.1|CI183730
genomic: GTAAAAAACATGGAGATGTGGAGGGAGAGAATTCAAAAAGTAAAAGAAAGgtattttctc ... tttattatagGGAACAAGCTGCCATTAGATTGAAAGATGAAAAAATTGAGAAGCTGGAGGA
EST: GTAAAAAACATGGAGATGTGGAGGGAGAGAATTCAAAAAGTAAAAGAAAG GGAACAAGCTGCCATTAGATTGAAAGATGAAAAAATTGAGAAGCTGGAGGAEST: gi|86495057|gb|CI137690.1|CI137690
genomic: GTAAAAAACATGGAGATGTGGAGGGAGAGAATTCAAAAAGTAAAAGAAAGgtattttctc ... tttattatagGGAACAAGCTGCCATTAGATTGAAAGATGAAAAAATTGAGAAGCTGGAGGA
EST: GTAAAAAACATGGAGATGTGGAGGGAGAGAATTCAAAAAGTAAAAGAAAG GGAACAAGCTGCCATTAGATTGAAAGATGAAAAAATTGAGAAGCTGGAGGAEST: gi|88255261|gb|CI354085.1|CI354085
genomic: GTAAAAAACATGGAGATGTGGAGGGAGAGAATTCAAAAAGTAAAAGAAAGgtattttctc ... tttattatagGGAACAAGCTGCCATTAGATTGAAAGATGAAAAAATTGAGAAGCTGGAGGA
EST: GTAAAAAACATGGAGATGTGGAGGGAGAGAATTCAAAAAGTAAAAGAAAG GGAACAAGCTGCCATTAGATTGAAAGATTAAAAAATTGAGAAGCTGGAGGAEST: gi|89165864|gb|CI102954.1|CI102954
genomic: GTAAAAAACATGGAGATGTGGAGGGAGAGAATTCAAAAAGTAAAAGAAAGgtattttctc ... tttattatagGGAACAAGCTGCCATTAGATTGAAAGATGAAAAAATTGAGAAGCTGGAGGA
EST: GTAAAAAACATGGAGATGTGGAGGGAGAGAATTCAAAAAGTAAAAGAAAG GGAACAAGCTGCCATTAGATTGAAAGATGAAAAAATTGAGAAGCTGGAGGAEST: gi|87014873|gb|CI271472.1|CI271472
genomic: GTAAAAAACATGGAGATGTGGAGGGAGAGAATTCAAAAAGTAAAAGAAAGgtattttctc ... tttattatagGGAACAAGCTGCCATTAGATTGAAAGATGAAAAAATTGAGAAGCTGGAGGA
EST: GTAAAAAACATGGAGATGTGGAGGGAGAGAATTCAAAAAGTAAAAGAAAG GGAACAAGCTGCCATTAGATTGAAAGATGAAAAAATTGAGAAGCTGGAGGAEST: gi|218484344|gb|FG954469.1|FG954469
genomic: GTAAAAAACATGGAGATGTGGAGGGAGAGAATTCAAAAAGTAAAAGAAAGgtattttctc ... tttattatagGGAACAAGCTGCCATTAGATTGAAAGATGAAAAAATTGAGAAGCTGGAGGA
EST: GTAAAAAACATGGAGATGTGGAGGGAGAGAATTCAAAAAGTAAAAGAAAG GGAACAAGCTGCCATTAGATTGAAAGATGAAAAAATTGAGAAGCTGGAGGAEST: gi|86490088|gb|CI132721.1|CI132721
genomic: GTAAAAAACATGGAGATGTGGAGGGAGAGAATTCAAAAAGTAAAAGAAAGgtattttctc ... tttattatagGGAACAAGCTGCCATTAGATTGAAAGATGAAAAAATTGAGAAGCTGGAGGA
EST: GTAAAAAACATGGAGATGTGGAGGGAGAGAATTCAAAAAGTAAAAGAAAG GGAACAAGCTGCCATTAGATTGAAAGATGAAAAAATTGAGAAGCTGGAGGAEST: gi|89164799|gb|CI101887.1|CI101887
genomic: GTAAAAAACATGGAGATGTGGAGGGAGAGAATTCAAAAAGTAAAAGAAAGgtattttctc ... tttattatagGGAACAAGCTGCCATTAGATTGAAAGATGAAAAAATTGAGAAGCTGGAGGA
EST: GTAAAAAACATGGAGATGTGGAGGGAGAGAATTCAAAAAGTAAAAGAAAG GGAACAAGCTGCCATTAGATTGAAAGATGAAAAAATTGAGAAGCTGGAGGAEST: gi|86492775|gb|CI135408.1|CI135408
genomic: GTAAAAAACATGGAGATGTGGAGGGAGAGAATTCAAAAAGTAAAAGAAAGgtattttctc ... tttattatagGGAACAAGCTGCCATTAGATTGAAAGATGAAAAAATTGAGAAGCTGGAGGA
EST: GTAAAAAACATGGAGATGTGGAGGGAGAGAATTCAAAAAGTAAAAGAAAG GGAACAAGCTGCCATTAGATTGAAAGATGAAAAAATTGAGAAGCTGGAGGAEST: gi|86529860|gb|CI170066.1|CI170066
genomic: GTAAAAAACATGGAGATGTGGAGGGAGAGAATTCAAAAAGTAAAAGAAAGgtattttctc ... tttattatagGGAACAAGCTGCCATTAGATTGAAAGATGAAAAAATTGAGAAGCTGGAGGA
EST: GTAAAAAACATGGAGATGTGGAGGGAGAGAATTCAAAAAGTAAAAGAAAG GGAACAAGCTGCCATTAGATTGAAAGATGAAAAAATTGAGAAGCTGGAGGA
genomic: GTAAAAAACATGGAGATGTGGAGGGAGAGAATTCAAAAAGTAAAAGAAAGgtattttctc ... tttattatagGGAACAAGCTGCCATTAGATTGAAAGATGAAAAAATTGAGAAGCTGGAGGA
caatttatagtttctgttttactgatgatcaaaaatcggtttgattttattatagGGAACAAGCTGCCATTAGATTGAAAGATGAAAAAATTGAGAAGCTGGAGGAGGAG
ttttatt CT-rich tract
tttgattttattata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgaaattggacagaaattgcgttaatttagaatttgagttgatctcaatttatagtttctgttttactgatgatcaaaaatcggtttgattttattatagGGAACAAGCTGCCATTAGATTGAAAGATGAAAAAATTGAGAAGCTGGAGGAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - -acagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaaaat