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...ttttgagtgtctgcatgcaacgcagtcaaggaatttaactaaaacatagaaatgtagctcctacatgtaatattgatatgtacatttatcactatcgcagAAAGTTGTGACAATGACACCCTGTATGTGGAACGGAACAAAGAGACCATGCTACCTTTTTGCTAGAAAGTTTTACCCAGAAGCTCTCAACAACCTACTGA
species | Oryza sativa |
transcript | LOC_Os02g07880.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GCTATCAAAGAGAACTTCCGTATTACAAGTGATGATAAG AAAGTTGTGACAATGACACCCTGTATGTGGAACGGAACAAAGAGACCATGCEST: gi|427667|gb|D23801.1|D23801
genomic: GCTATCAAAGAGAACTTCCGTATTACAAGTGATGATAAGgtaatatagc ... actatcgcagAAAGTTGTGACAATGACACCCTGTATGTGGAACGGAACAAAGAGACCATGC
EST: GCTATCAAAGAGAACTTCCGTATTACAAGTGATGATAAG AAAGTTGTGACAATGACACCCTGTATGTGGAACGGAACAAAGAGACCATGCEST: gi|86429643|gb|CI076324.1|CI076324
genomic: GCTATCAAAGAGAACTTCCGTATTACAAGTGATGATAAGgtaatatagc ... actatcgcagAAAGTTGTGACAATGACACCCTGTATGTGGAACGGAACAAAGAGACCATGC
EST: GCTATCAAAGAGAACTTCCGTATTACAAGTGATGATAAG AAAGTTGTGACAATGACACCCTGTATGTGGAACGGAACAAAGAGACCATGCEST: gi|88229942|gb|CI229818.1|CI229818
genomic: GCTATCAAAGAGAACTTCCGTATTACAAGTGATGATAAGgtaatatagc ... actatcgcagAAAGTTGTGACAATGACACCCTGTATGTGGAACGGAACAAAGAGACCATGC
EST: AGAGAACTTCCGTATTACAAGTGATGATAAG AAAGTTGTGACAATGACACCCTGTATGTGGAACGGAACAAAGAGACCATGCEST: gi|29633318|gb|CB638327.1|CB638327
genomic: AGAGAACTTCCGTATTACAAGTGATGATAAGgtaatatagc ... actatcgcagAAAGTTGTGACAATGACACCCTGTATGTGGAACGGAACAAAGAGACCATGC
EST: GCTATCAAAGAGAACTTCCGTATTACAAGTGATGATAAG AAAGTTGTGCCAATGACCCCCTGTATGTGGAACGGAACAAAGAGCCCATGCEST: gi|86600858|gb|CI356615.1|CI356615
genomic: GCTATCAAAGAGAACTTCCGTATTACAAGTGATGATAAGgtaatatagc ... actatcgcagAAAGTTGTGACAATGACACCCTGTATGTGGAACGGAACAAAGAGACCATGC
EST: GCTATCAAAGAGAACTTCCGTATTACAAGTGATGATAAG AAAGTTGTGACAATGACACCCTGTATGTGGAACGGAACAAAAGAGACCATGEST: gi|86832776|gb|CI345190.1|CI345190
genomic: GCTATCAAAGAGAACTTCCGTATTACAAGTGATGATAAGgtaatatagc ... actatcgcagAAAGTTGTGACAATGACACCCTGTATGTGGAACGGAAC-AAAGAGACCATG
EST: GCTATCAAAGAGAACTTCCGTATTACAAGTGATGATAAG AAAGTTGTGACAATGACACCCCTGTATGTGGAACGGAACAAAGAGACCATGEST: gi|25798649|gb|CA754610.1|CA754610
genomic: GCTATCAAAGAGAACTTCCGTATTACAAGTGATGATAAGgtaatatagc ... actatcgcagAAAGTTGTGACAATGACA-CCCTGTATGTGGAACGGAACAAAGAGACCATG
EST: CTTCCGTATTACAAGTGATGATAAG AAAGTTGTGACAATGACACCCTGTATGTGGAACGGAACAAAGAGACCATGCEST: gi|29663728|gb|CB660003.1|CB660003
genomic: CTTCCGTATTACAAGTGATGATAAGgtaatatagc ... actatcgcagAAAGTTGTGACAATGACACCCTGTATGTGGAACGGAACAAAGAGACCATGC
EST: GCTATCAAAGAGAACTTCCGTATTACAAGTGATGATAAG AAAGTTGTGACAATGACACCCTGTATGTGGAACGGAACAAAGAGACCATGCEST: gi|86492716|gb|CI135349.1|CI135349
genomic: GCTATCAAAGAGAACTTCCGTATTACAAGTGATGATAAGgtaatatagc ... actatcgcagAAAGTTGTGACAATGACACCCTGTATGTGGAACGGAACAAAGAGACCATGC
EST: GCTATCAAAGAGAACTTCCGTATTACAAGTGATGATAAG AAAGTTGTGACAATGACACCCTGTATGTGGAACGGAACAAAGAGACCATGC
genomic: GCTATCAAAGAGAACTTCCGTATTACAAGTGATGATAAGgtaatatagc ... actatcgcagAAAGTTGTGACAATGACACCCTGTATGTGGAACGGAACAAAGAGACCATGC
atagaaatgtagctcctacatgtaatattgatatgtacatttatcactatcgcagAAAGTTGTGACAATGACACCCTGTATGTGGAACGGAACAAAGAGACCATGCTACCTTTTTGCTAGAAAGTTTTACCCAGAAGCTCTCAACAACCTACTGA
tattgat putative branch site (score: 12)
taatattgatatgtac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttgagtgtctgcatgcaacgcagtcaaggaatttaactaaaacatagaaatgtagctcctacatgtaatattgatatgtacatttatcactatcgcagAAAGTTGTGACAATGACACCCTGTATGTGGAACGGAACAAAGAGACCATGCTACCTTTTTGCTAGAAAGTTTTACCCAGAAGCTCTCAACAACCTACTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - -tgcatgc
- - - - - - - - - - - - - - - - - - -actaaaa
- - - - - - - - - - - - - - - - - - - - - - catagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atatgta