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gtatttgcctactgccagtatgatgacagtgcttaaattttagcctgacacttggtaaatcttatgagtaaattatcagtgcattttttccctcgtatctttgtttttgtgggtctgactaagttttactctgtttcactttgcctttttttttttcactctgaagGAGAATGGTATCTCTGAGGACATGGAAGAGGTTGTCTATGAGTTGTCAGATAATGTGACCAGGATGCTCTCCTAGGGCATCAGTAACCAGCGTTCAGCCG
species | Oryza sativa |
transcript | LOC_Os02g04230.3 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CTAGTATCAGTGCTTCAACGTGCATCATTAGAGGGAATAAAGGCCCGAAG GAGAATGGTATCTCTGAGGACATGGAAGAGGTTGTCTATGAGTTGTCAGATEST: gi|33803004|gb|CF327373.1|CF327373
genomic: CTAGTATCAGTGCTTCAACGTGCATCATTAGAGGGAATAAAGGCCCGAAGgtatttgcct ... cactctgaagGAGAATGGTATCTCTGAGGACATGGAAGAGGTTGTCTATGAGTTGTCAGAT
EST: CTAGTATCAGTGCTTCAACGTGCATCATTAGAGGGAATAAAGGCCCGAAG GAGAATGGTATCTCTGAGGACATGGAAGAGGTTGTCTATGAGTTGTCAGATEST: gi|88483323|gb|CI420594.1|CI420594
genomic: CTAGTATCAGTGCTTCAACGTGCATCATTAGAGGGAATAAAGGCCCGAAGgtatttgcct ... cactctgaagGAGAATGGTATCTCTGAGGACATGGAAGAGGTTGTCTATGAGTTGTCAGAT
EST: CATTAGAGGGAATAAAGGCCCGAAG GAGAATGGTATCTCTGAGGACATGGAAGAGGTTGTCTATGAGTTGTCAGATEST: gi|14571318|gb|BI118686.1|BI118686
genomic: CATTAGAGGGAATAAAGGCCCGAAGgtatttgcct ... cactctgaagGAGAATGGTATCTCTGAGGACATGGAAGAGGTTGTCTATGAGTTGTCAGAT
EST: CTAGTATCAGTGCTTCAACGTGCATCATTAGAGGGAATAAAGGCCCGAAG GAGAATGGTATCTCTGAGGACATGGAAGAGGTTGTCTATGAGTTGTCAGATEST: gi|29629373|gb|CB634384.1|CB634384
genomic: CTAGTATCAGTGCTTCAACGTGCATCATTAGAGGGAATAAAGGCCCGAAGgtatttgcct ... cactctgaagGAGAATGGTATCTCTGAGGACATGGAAGAGGTTGTCTATGAGTTGTCAGAT
EST: CTAGTATCAGTGCTTCAACGTGCATCATTAGAGGGAATAAAGGCCCGAAG GAGAATGGTATCTCTGAGGACATGGAAGAGGTTGTCTATGAGTTGTCAGATEST: gi|86536057|gb|CI176263.1|CI176263
genomic: CTAGTATCAGTGCTTCAACGTGCATCATTAGAGGGAATAAAGGCCCGAAGgtatttgcct ... cactctgaagGAGAATGGTATCTCTGAGGACATGGAAGAGGTTGTCTATGAGTTGTCAGAT
EST: CTAGTATCAGTGCTTCAACGTGCATCATTAGAGGGAATAAAGGCCCGAAG GAGAATGGTATCTCTGAGGACATGGAAGAGGTTGTCTATGAGTTGTCAGAT
genomic: CTAGTATCAGTGCTTCAACGTGCATCATTAGAGGGAATAAAGGCCCGAAGgtatttgcct ... cactctgaagGAGAATGGTATCTCTGAGGACATGGAAGAGGTTGTCTATGAGTTGTCAGAT
ggtctgactaagttttactctgtttcactttgcctttttttttttcactctgaagGAGAATGGTATCTCTGAGGACATGGAAGAGGTTGTCTATGAGTTGTCAGATAATGTGACCAGGATGCTCTCCTAGGGCATCAGTAACCAGCGTTCAGCCG
gtctgac putative branch site (score: 3)
ttttactctgtttcac putative PPT
tttttttttttcact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttgcctactgccagtatgatgacagtgcttaaattttagcctgacacttggtaaatcttatgagtaaattatcagtgcattttttccctcgtatctttgtttttgtgggtctgactaagttttactctgtttcactttgcctttttttttttcactctgaagGAGAATGGTATCTCTGAGGACATGGAAGAGGTTGTCTATGAGTTGTCAGATAATGTGACCAGGATGCTCTCCTAGGGCATCAGTAACCAGCGTTCAGCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG