1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtatgtctcacaactcagtactatttttctattgctttctttgccttgtgctctatgcagaaacctaaatcttgctttattctggattgctagATACGAGGGAGCGATACATCCACTGCTGAGTCTGGATCTGAGGCTGAAGATGTTACGTCTCCAAAAGTACTGAGAAGTTACATCTCCCATCCTAAGTTGA
species | Oryza sativa |
transcript | LOC_Os02g04020.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CCAATGGAGAGGAAAAGATAATTTCTTATGCCAAGTCCAAGCACCACACA ATACGAGGGAGCGATACATGCANCTGCTGAGTCTGGATCTGAGGCTGAAGAEST: gi|29625318|gb|CB630329.1|CB630329
genomic: CCAATGGAGAGGAAAAGATAATTTCTTATGCCAAGTCCAAGCACCACACAgtatgtctca ... ggattgctagATACGAGGGAGCGATACATCCA-CTGCTGAGTCTGGATCTGAGGCTGAAGA
EST: CCAATGGAGAGGAAAAGATAATTTCTTATGCCAAGTCCAAGCACCACACA ATACGAGGGAGCGATACATCCACTGCTGAGTCTGGATCTGAGGCTGAAGATEST: gi|29625357|gb|CB630368.1|CB630368
genomic: CCAATGGAGAGGAAAAGATAATTTCTTATGCCAAGTCCAAGCACCACACAgtatgtctca ... ggattgctagATACGAGGGAGCGATACATCCACTGCTGAGTCTGGATCTGAGGCTGAAGAT
EST: CCAATGGAGAGGAAAAGATAATTTCTTATGCCAAGTCCAAGCACCACACA ATACGAGGGAGCGATACATCCACTGCTGAGTCTGGATCTGAGGCTGAAGATEST: gi|58663368|gb|CK052054.1|CK052054
genomic: CCAATGGAGAGGAAAAGATAATTTCTTATGCCAAGTCCAAGCACCACACAgtatgtctca ... ggattgctagATACGAGGGAGCGATACATCCACTGCTGAGTCTGGATCTGAGGCTGAAGAT
EST: CCAATGGAGAGGAAAAGATAATTTCTTATGCCAGGTCCAAGCACCACACA ATACGAGGGAGCGATACATCCACTGCTGAGTCTGGATCTGAGGCTGAAGATEST: gi|58659119|gb|CK047799.1|CK047799
genomic: CCAATGGAGAGGAAAAGATAATTTCTTATGCCAAGTCCAAGCACCACACAgtatgtctca ... ggattgctagATACGAGGGAGCGATACATCCACTGCTGAGTCTGGATCTGAGGCTGAAGAT
EST: CCAATGGAGAGGAAAAGATAATTTCTTATGCCAAGTCCAAGCACCACACA ATACGAGGGAGCGATACATCCACTGCTGAGTCTGGATCTGAGGCTGAAGATEST: gi|29640359|gb|CB645368.1|CB645368
genomic: CCAATGGAGAGGAAAAGATAATTTCTTATGCCAAGTCCAAGCACCACACAgtatgtctca ... ggattgctagATACGAGGGAGCGATACATCCACTGCTGAGTCTGGATCTGAGGCTGAAGAT
EST: CCAATGGAGAGGAAAAGATAATTTCTTATGCCAAGTCCAAGCACCACACA ATACGAGGGAGCGATACATCCACTGCTGAGTCTGGATCTGAGGCTGAAGATEST: gi|58677461|gb|CK066148.1|CK066148
genomic: CCAATGGAGAGGAAAAGATAATTTCTTATGCCAAGTCCAAGCACCACACAgtatgtctca ... ggattgctagATACGAGGGAGCGATACATCCACTGCTGAGTCTGGATCTGAGGCTGAAGAT
EST: CCAATGGAGAGGAAAAGATAATTTCTTATGCCAAGTCCAAGCACCACACA ATACGAGGGAGCGATACATCCACTGCTGAGTCTGGATCTGAGGCTGAAGATEST: gi|88586158|gb|CI703844.1|CI703844
genomic: CCAATGGAGAGGAAAAGATAATTTCTTATGCCAAGTCCAAGCACCACACAgtatgtctca ... ggattgctagATACGAGGGAGCGATACATCCACTGCTGAGTCTGGATCTGAGGCTGAAGAT
EST: CCAATGGAGAGGAAAAGATAATTTCTTATGCCAAGTCCAAGCACCACACA ATACGAGGGAGCGATACATCC
genomic: CCAATGGAGAGGAAAAGATAATTTCTTATGCCAAGTCCAAGCACCACACAgtatgtctca ... ggattgctagATACGAGGGAGCGATACATCC
ctttgccttgtgctctatgcagaaacctaaatcttgctttattctggattgctagATACGAGGGAGCGATACATCCACTGCTGAGTCTGGATCTGAGGCTGAAGATGTTACGTCTCCAAAAGTACTGAGAAGTTACATCTCCCATCCTAAGTTGA
acctaaa putative branch site (score: 58)
taaatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtctcacaactcagtactatttttctattgctttctttgccttgtgctctatgcagaaacctaaatcttgctttattctggattgctagATACGAGGGAGCGATACATCCACTGCTGAGTCTGGATCTGAGGCTGAAGATGTTACGTCTCCAAAAGTACTGAGAAGTTACATCTCCCATCCTAAGTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT