1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtatgtacttgaggacctatttatggttttgtgagacaccaatagagcatatttctttgtgtgagattaagtatgcatttgattatgtagGTAGTTCTCAGAATGGCATATCACATACAGCATTAAATCAGAACATGTCGATGGCTCCAACTCAAACGGGTGTAGTAATCGGGGGAGTTGCTCCCACAAC
species | Oryza sativa |
transcript | LOC_Os02g03580.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GATTCACATTCAAAGGAAAATGATGTAAAGGAAGATG GTAGTTCTCAGAATGGCATATCACATACAGCATTAAATCAGAACATGTCGAEST: gi|29670501|gb|CB666776.1|CB666776
genomic: GATTCACATTCAAAGGAAAATGATGTAAAGGAAGATGgtatgtactt ... gattatgtagGTAGTTCTCAGAATGGCATATCACATACAGCATTAAATCAGAACATGTCGA
EST: GATTCACATTCAAAGGAAAATGATGTAAAGGAAGATG GTAGTTCTCAGAATGGCATATCACATACAGCATTAAATCAGAACATGTCGAEST: gi|29665043|gb|CB661318.1|CB661318
genomic: GATTCACATTCAAAGGAAAATGATGTAAAGGAAGATGgtatgtactt ... gattatgtagGTAGTTCTCAGAATGGCATATCACATACAGCATTAAATCAGAACATGTCGA
EST: GATTCACATTCAAAGGAAAATGATGTAAAGGAAGATG GTAGTTCTCAGAATGGCATATCACATACAGCATTAAATCAGAACATGTCGAEST: gi|32948093|gb|BP184665.1|BP184665
genomic: GATTCACATTCAAAGGAAAATGATGTAAAGGAAGATGgtatgtactt ... gattatgtagGTAGTTCTCAGAATGGCATATCACATACAGCATTAAATCAGAACATGTCGA
EST: GATTCACATTCAAAGGAAAATGATGTAAAGGAAGATG GTAGTTCTCAGAATGGCATATCACATACAGCATTAAATCAGAACATGTCGAEST: gi|32948307|gb|BP184879.1|BP184879
genomic: GATTCACATTCAAAGGAAAATGATGTAAAGGAAGATGgtatgtactt ... gattatgtagGTAGTTCTCAGAATGGCATATCACATACAGCATTAAATCAGAACATGTCGA
EST: GATTCACATTCAAAGGAAAATGATGTAAAGGAAGATG GTAGTTCTCAGAATGGCATATCACATACAGCATTAAATCAGAACATGTCGA
genomic: GATTCACATTCAAAGGAAAATGATGTAAAGGAAGATGgtatgtactt ... gattatgtagGTAGTTCTCAGAATGGCATATCACATACAGCATTAAATCAGAACATGTCGA
acaccaatagagcatatttctttgtgtgagattaagtatgcatttgattatgtagGTAGTTCTCAGAATGGCATATCACATACAGCATTAAATCAGAACATGTCGATGGCTCCAACTCAAACGGGTGTAGTAATCGGGGGAGTTGCTCCCACAAC
atttgat putative branch site (score: 8)
atatttcttt TA-rich tract