1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...aatttctctatatacaaacttaaatctcatgttacagtaattctcaagtcatactactccatggctgcttgacttactaaaattgctttcattaatgcagGGGAAGAAGGTTAAAGTTCCCACTTTTCTCGTTCCGGCGACACAAAAG
species | Oryza sativa |
transcript | LOC_Os02g03260.3 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GAGGTAAAACTGAGGACTTCTTTGCTGCTGCGAAGGTGTTCTTAGCTTCG GGGAAGAAGGTTAAAGTTCCCACTTTTCTCGTTCCGGCGACACAAAAGEST: gi|11442959|gb|BF430855.1|BF430855
genomic: GAGGTAAAACTGAGGACTTCTTTGCTGCTGCGAAGGTGTTCTTAGCTTCGgtaagaggct ... attaatgcagGGGAAGAAGGTTAAAGTTCCCACTTTTCTCGTTCCGGCGACACAAAAG
EST: GAGGTAAAACTGAGGACTTCTTTGCTGCTGCGAAGGTGTTCTTAGCTTCG GGGAAGAAGGTTAAAGTTCCCACTTTTCTCGTTCCGGCGACACAAAAGEST: gi|29677182|gb|CB673457.1|CB673457
genomic: GAGGTAAAACTGAGGACTTCTTTGCTGCTGCGAAGGTGTTCTTAGCTTCGgtaagaggct ... attaatgcagGGGAAGAAGGTTAAAGTTCCCACTTTTCTCGTTCCGGCGACACAAAAG
EST: GAGGTAAAACTGAGGACTTCTTTGCTGCTGCGAAGGTGTTCTTAGCTTCG GGGAAGAAGGTTAAAGTTCCCACTTTTCTCGTTCCGGCGACACAAAAGEST: gi|29632468|gb|CB637477.1|CB637477
genomic: GAGGTAAAACTGAGGACTTCTTTGCTGCTGCGAAGGTGTTCTTAGCTTCGgtaagaggct ... attaatgcagGGGAAGAAGGTTAAAGTTCCCACTTTTCTCGTTCCGGCGACACAAAAG
EST: GCTGCTGCGAAGGTGTTCTTAGCTTCG GGGAAGAAGGTTAAAGTTCCCACTTTTCTCGTTCCGGCGACACAAAAGEST: gi|38477001|gb|CF961134.1|CF961134
genomic: GCTGCTGCGAAGGTGTTCTTAGCTTCGgtaagaggct ... attaatgcagGGGAAGAAGGTTAAAGTTCCCACTTTTCTCGTTCCGGCGACACAAAAG
EST: CTTTGCTGCTGCGAAGGTGTTCTTAGCTTCG GGGAAGAAGGTTAAAGTTCCCACTTTTCTCGTTCCGGCGACGGAAAAGEST: gi|218494441|gb|FG968569.1|FG968569
genomic: CTTTGCTGCTGCGAAGGTGTTCTTAGCTTCGgtaagaggct ... attaatgcagGGGAAGAAGGTTAAAGTTCCCACTTTTCTCGTTCCGGCGACACAAAAG
EST: GAGGTAAAACTGAGGACTTCTTTGCTGCTGCGAAGGTGGTCTTAGCTTCG GGGAAGACGGTTACAGTTCCCACTTTTCTCGTTCCGGCGACACAAAAGGTGEST: gi|58666580|gb|CK055266.1|CK055266
genomic: GAGGTAAAACTGAGGACTTCTTTGCTGCTGCGAAGGTGTTCTTAGCTTCGgtaagaggct ... attaatgcagGGGAAGAAGGTTAAAGTTCCCACTTTTCTCGTTCCGGCGACACAAAAGGTG
EST: GAGGTAAAACTGAGGACTTCTTTGCTGCTGCGAAGGTGTTCTTAGCTTCG GGGAAGAAGGTTAAAGTTCCCACTTTTCTCGTTCCGGCGACACAAAAGEST: gi|86503655|gb|CI146288.1|CI146288
genomic: GAGGTAAAACTGAGGACTTCTTTGCTGCTGCGAAGGTGTTCTTAGCTTCGgtaagaggct ... attaatgcagGGGAAGAAGGTTAAAGTTCCCACTTTTCTCGTTCCGGCGACACAAAAG
EST: GGTGTTCTTAGCTTCG GGGAAGAAGGTTAAAGTTCCCACTTTTCTCGTTCCGGCGACACAAAAGEST: gi|38478547|gb|CF962680.1|CF962680
genomic: GGTGTTCTTAGCTTCGgtaagaggct ... attaatgcagGGGAAGAAGGTTAAAGTTCCCACTTTTCTCGTTCCGGCGACACAAAAG
EST: GGGGTAAAACTGAGGACTTCTTTGCTGCTGCGAAGGTGTTCTTAGCTTCG GGGAAGAAGGTTAAAGTTCCCACTTTTCTCGTTCCGGCGACACAAAAGEST: gi|29658442|gb|CB654717.1|CB654717
genomic: GAGGTAAAACTGAGGACTTCTTTGCTGCTGCGAAGGTGTTCTTAGCTTCGgtaagaggct ... attaatgcagGGGAAGAAGGTTAAAGTTCCCACTTTTCTCGTTCCGGCGACACAAAAG
EST: GAGGTAAAACTGAGGACTTCTTTGCTGCTGCGAAGGTGTTCTTAGCTTCG GGGAAGAAGGTTAAAGTTCCCACTTTTCTCGTTCCGGCGACACAAAAGEST: gi|29628819|gb|CB633830.1|CB633830
genomic: GAGGTAAAACTGAGGACTTCTTTGCTGCTGCGAAGGTGTTCTTAGCTTCGgtaagaggct ... attaatgcagGGGAAGAAGGTTAAAGTTCCCACTTTTCTCGTTCCGGCGACACAAAAG
EST: GAGGTAAAACTGAGGACTTCTTTGCTGCTGCGAAGGTGTTCTTAGCTTCG GGGAAGAAGGTTAAAGTTCCCACTTTTCTCGTTCCGGCGACACAAAAGEST: gi|29636583|gb|CB641592.1|CB641592
genomic: GAGGTAAAACTGAGGACTTCTTTGCTGCTGCGAAGGTGTTCTTAGCTTCGgtaagaggct ... attaatgcagGGGAAGAAGGTTAAAGTTCCCACTTTTCTCGTTCCGGCGACACAAAAG
EST: GAGGTAAAACTGAGGACTTCTTTGCTGCTGCGAAGGTGTTCTTAGCTTCG GGGAAGAAGGTTAAAGTTCCCACTTTTCTCGTTCCGGCGACACAAAAGEST: gi|29616438|gb|CB621450.1|CB621450
genomic: GAGGTAAAACTGAGGACTTCTTTGCTGCTGCGAAGGTGTTCTTAGCTTCGgtaagaggct ... attaatgcagGGGAAGAAGGTTAAAGTTCCCACTTTTCTCGTTCCGGCGACACAAAAG
EST: GAGGTAAAACTGAGGACTTCTTTGCTGCTGCGAAGGTGTTCTTAGCTTCG GGGAAGAAGGTTAAAGTTCCCACTTTTCTCGTTCCGGCGACACAAAAGEST: gi|218490400|gb|FG966882.1|FG966882
genomic: GAGGTAAAACTGAGGACTTCTTTGCTGCTGCGAAGGTGTTCTTAGCTTCGgtaagaggct ... attaatgcagGGGAAGAAGGTTAAAGTTCCCACTTTTCTCGTTCCGGCGACACAAAAG
EST: GAGGTAAAACTGAGGACTTCTTTGCTGCTGCGAAGGTGTTCTTAGCTTCG GGGAAGAAGGTTAAAGTTCCCACTTTTCTCGTTCCGGCGACACAAAAGEST: gi|313084027|gb|HO213810.1|HO213810
genomic: GAGGTAAAACTGAGGACTTCTTTGCTGCTGCGAAGGTGTTCTTAGCTTCGgtaagaggct ... attaatgcagGGGAAGAAGGTTAAAGTTCCCACTTTTCTCGTTCCGGCGACACAAAAG
EST: GAGGTAAAACTGAGGACTTCTTTGCTGCTGCGAAGGTGTTCTTAGCTTCG GGGAAGAAGGTTAAAGTTCCCACTTTTCTCGTTCCGGCGACACAAAAG
genomic: GAGGTAAAACTGAGGACTTCTTTGCTGCTGCGAAGGTGTTCTTAGCTTCGgtaagaggct ... attaatgcagGGGAAGAAGGTTAAAGTTCCCACTTTTCTCGTTCCGGCGACACAAAAG
aagtcatactactccatggctgcttgacttactaaaattgctttcattaatgcagGGGAAGAAGGTTAAAGTTCCCACTTTTCTCGTTCCGGCGACACAAAAG
ctttcatt CT-rich tract
ttactaaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatttctctatatacaaacttaaatctcatgttacagtaattctcaagtcatactactccatggctgcttgacttactaaaattgctttcattaatgcagGGGAAGAAGGTTAAAGTTCCCACTTTTCTCGTTCCGGCGACACAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG