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gtacacaaatcaagcatctctatttctatctttattttttggaagacttgttcctgtatacttttagagttatgcctctgatttaacatttccttcgttgttgccagCGAGTCATTAATAAGTGGTGCATGGCCTTCCTTATACTTTTTGAGGAAGGACTGCGAAACCTGCGTGAAGCTCAATTAGTATCCCAAGGTGCAGTGGATA
species | Oryza sativa |
transcript | LOC_Os02g02710.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CCAGCGATTGCTTCAAGATGTTCAATCCCGTTGACAAGACAACATTCGAT CGAGTCATTAATAAGTGGTGCATGGCCTTCCTTATACTTTTTGAGGAAGGAEST: gi|29644785|gb|CB649792.1|CB649792
genomic: CCAGCGATTGCTTCAAGATGTTCAATCCCGTTGACAAGACAACATTCGATgtacacaaat ... ttgttgccagCGAGTCATTAATAAGTGGTGCATGGCCTTCCTTATACTTTTTGAGGAAGGA
EST: CCAGCGATTGCTTCAAGATGTTCAATCCCGTTGACAAGACAACATTCGAT CGAGTCATTAATAAGTGGTGCATGGCCTTCCTTATACTTTTTGAGGAAGGA
genomic: CCAGCGATTGCTTCAAGATGTTCAATCCCGTTGACAAGACAACATTCGATgtacacaaat ... ttgttgccagCGAGTCATTAATAAGTGGTGCATGGCCTTCCTTATACTTTTTGAGGAAGGA
cctgtatacttttagagttatgcctctgatttaacatttccttcgttgttgccagCGAGTCATTAATAAGTGGTGCATGGCCTTCCTTATACTTTTTGAGGAAGGACTGCGAAACCTGCGTGAAGCTCAATTAGTATCCCAAGGTGCAGTGGATA
atttaac putative branch site (score: 3)
tttccttcgttgtt CT-rich tract
atttaacattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacacaaatcaagcatctctatttctatctttattttttggaagacttgttcctgtatacttttagagttatgcctctgatttaacatttccttcgttgttgccagCGAGTCATTAATAAGTGGTGCATGGCCTTCCTTATACTTTTTGAGGAAGGACTGCGAAACCTGCGTGAAGCTCAATTAGTATCCCAAGGTGCAGTGGATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA