1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaaagccagtttaattgatttaaaaaaaactgacatgatatcttgagttaagtggtacatcttctcaaaacagatccaatatgttgagtgcttttcttttcaggaaaatgcattttttacttatttaccgtttcttgcagGAAATATCTAGTAGAGGCCACGAAAGAAGCATCCAATTCTTATACTGAAGCG
species | Oryza sativa |
transcript | LOC_Os02g02690.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TTGCGTGACACCTATACCAAGGAAACAGTACCGGCACTACATAGGATCAG GAAATATCTAGTAGAGGCCACGAAAGAAGCATCCAATTCTTATACTGAAGCEST: gi|89182448|gb|CI113817.1|CI113817
genomic: TTGCGTGACACCTATACCAAGGAAACAGTACCGGCACTACATAGGATCAGgtaaagccag ... tttcttgcagGAAATATCTAGTAGAGGCCACGAAAGAAGCATCCAATTCTTATACTGAAGC
EST: TTGCGTGACACCTATACCAAGGAAACAGTACCGGCACTACATAGGATCAG GAAATATCTAGTAGAGGCCACGAAAGAAGCATCCAATTCTTATACTGAAGCEST: gi|88481854|gb|CI419125.1|CI419125
genomic: TTGCGTGACACCTATACCAAGGAAACAGTACCGGCACTACATAGGATCAGgtaaagccag ... tttcttgcagGAAATATCTAGTAGAGGCCACGAAAGAAGCATCCAATTCTTATACTGAAGC
EST: CGGCACTACATAGGATCAG GAAATATTTAGTAGAGGCCACGAAAGAAGCATCCAATTCTTATACTGAAGCEST: gi|86428585|gb|CI075266.1|CI075266
genomic: CGGCACTACATAGGATCAGgtaaagccag ... tttcttgcagGAAATATCTAGTAGAGGCCACGAAAGAAGCATCCAATTCTTATACTGAAGC
EST: TTGCGTGACACCTATACCAAGGAAACAGTACCGGCACTAAATAGGATCAG GAAANATTTAGTAGAGGCCACGAAAGAAGCATCCAATTCTTATACTGAAGCEST: gi|86491300|gb|CI133933.1|CI133933
genomic: TTGCGTGACACCTATACCAAGGAAACAGTACCGGCACTACATAGGATCAGgtaaagccag ... tttcttgcagGAAATATCTAGTAGAGGCCACGAAAGAAGCATCCAATTCTTATACTGAAGC
EST: TTGCGTGACACCTATACCAAGGAAACAGTACCGGCACTACATAGGATCAG GAAATATCTAGTAGAGGCCACGAAAGAAGCATCCAATTCTTATACTGAAGCEST: gi|163917926|gb|EG714758.1|EG714758
genomic: TTGCGTGACACCTATACCAAGGAAACAGTACCGGCACTACATAGGATCAGgtaaagccag ... tttcttgcagGAAATATCTAGTAGAGGCCACGAAAGAAGCATCCAATTCTTATACTGAAGC
EST: TTGCGTGACACCTATACCAAGGAAACAGTACCGGCACTACATAGGATCAG GAAATATCTAGTAGAGGCCACAAAAGAAGCATCCAATTCTTATACTGAAGCEST: gi|86426334|gb|CI071431.1|CI071431
genomic: TTGCGTGACACCTATACCAAGGAAACAGTACCGGCACTACATAGGATCAGgtaaagccag ... tttcttgcagGAAATATCTAGTAGAGGCCACGAAAGAAGCATCCAATTCTTATACTGAAGC
EST: TTGCGTGACACCTATACCAAGGAAACAGTACCGGCACTACATAGGATCAG GAAATATCTAGTAGAGGCCACGAAAGAAGCATCCAATTCTTATACTGAAGCEST: gi|86505602|gb|CI148235.1|CI148235
genomic: TTGCGTGACACCTATACCAAGGAAACAGTACCGGCACTACATAGGATCAGgtaaagccag ... tttcttgcagGAAATATCTAGTAGAGGCCACGAAAGAAGCATCCAATTCTTATACTGAAGC
EST: TTGCGTGACACCTATACCAAGGAAACAGTACCGGCACTACATAGGATCAG GAAATATCTAGTAGAGCCCACGAAAGAAGCATCCAATTCTTATACTGAAGCEST: gi|88248278|gb|CI248127.1|CI248127
genomic: TTGCGTGACACCTATACCAAGGAAACAGTACCGGCACTACATAGGATCAGgtaaagccag ... tttcttgcagGAAATATCTAGTAGAGGCCACGAAAGAAGCATCCAATTCTTATACTGAAGC
EST: TTGCGTGACACCTATACCAAGGAAACAGTACCGGCACTACATAGGATCAG GAAATATCTAGTAGAGGCCACGAAAGAAGCATCCAATTCTTATACTGAAGCEST: gi|86501777|gb|CI144410.1|CI144410
genomic: TTGCGTGACACCTATACCAAGGAAACAGTACCGGCACTACATAGGATCAGgtaaagccag ... tttcttgcagGAAATATCTAGTAGAGGCCACGAAAGAAGCATCCAATTCTTATACTGAAGC
EST: TTGCGTGACACCTATACCAAGGAAACAGTACCGGCACTACATAGGATCAG GAAATATCTAGTAGAGGCCACGAAAGAAGCATCCAATTCTTATACTGAAGCEST: gi|88227499|gb|CI226979.1|CI226979
genomic: TTGCGTGACACCTATACCAAGGAAACAGTACCGGCACTACATAGGATCAGgtaaagccag ... tttcttgcagGAAATATCTAGTAGAGGCCACGAAAGAAGCATCCAATTCTTATACTGAAGC
EST: TTGCGTGACACCTATACCAAGGAAACAGTACCGGCACTACATAGGATCAG GAAATATCTAGTAGAGGCCACGAAAGAAGCATCCAATTCTTATACTGAAGCEST: gi|88990699|gb|CI108086.1|CI108086
genomic: TTGCGTGACACCTATACCAAGGAAACAGTACCGGCACTACATAGGATCAGgtaaagccag ... tttcttgcagGAAATATCTAGTAGAGGCCACGAAAGAAGCATCCAATTCTTATACTGAAGC
EST: TTGCGTGACACCTATACCAAGGAAACAGTACCGGCACTACATAGGATCAG GAAATATCTAGTAGAGGCCACGAAAGAAGCATCCAATTCTTATACTGAAGCEST: gi|396941424|gb|HO188633.1|HO188633
genomic: TTGCGTGACACCTATACCAAGGAAACAGTACCGGCACTACATAGGATCAGgtaaagccag ... tttcttgcagGAAATATCTAGTAGAGGCCACGAAAGAAGCATCCAATTCTTATACTGAAGC
EST: TTGCGTGACACCTATACCAAGGAAACAGTACCGGCACTACATAGGATCAG GAAATATCTAGTAGAGGCCACGAAAGAAGCATCCAATTCTTATACCGAAGCEST: gi|88245688|gb|CI245537.1|CI245537
genomic: TTGCGTGACACCTATACCAAGGAAACAGTACCGGCACTACATAGGATCAGgtaaagccag ... tttcttgcagGAAATATCTAGTAGAGGCCACGAAAGAAGCATCCAATTCTTATACTGAAGC
EST: AAGGAAACAGTACCGGCACTACATAGGATCAG GAAATATCTAGTAGAGGCCACGAAAGAAGCATCCAATTCTTATACTGAAGCEST: gi|88974820|gb|CI023114.1|CI023114
genomic: AAGGAAACAGTACCGGCACTACATAGGATCAGgtaaagccag ... tttcttgcagGAAATATCTAGTAGAGGCCACGAAAGAAGCATCCAATTCTTATACTGAAGC
EST: TTGCGTGACACCTATACCAAGGAAACAGTACCGGCACTACATAGGATCAG GAAATATCTAGTAGAGGCCACGAAAGAAGCATCCAATTCTTATACTGAAGCEST: gi|94362670|gb|CI052789.1|CI052789
genomic: TTGCGTGACACCTATACCAAGGAAACAGTACCGGCACTACATAGGATCAGgtaaagccag ... tttcttgcagGAAATATCTAGTAGAGGCCACGAAAGAAGCATCCAATTCTTATACTGAAGC
EST: TTGCGTGACACCTATACCAAGGAAACAGTACCGGCACTACATAGGATCAG GAAATATCTAGTAGAGGCCACGAAAGAAGCATCCAATTCTTATACTGAAGCEST: gi|86539112|gb|CI179318.1|CI179318
genomic: TTGCGTGACACCTATACCAAGGAAACAGTACCGGCACTACATAGGATCAGgtaaagccag ... tttcttgcagGAAATATCTAGTAGAGGCCACGAAAGAAGCATCCAATTCTTATACTGAAGC
EST: TTGCGTGACACCTATACCAAGGAAACAGTACCGGCACTACATAGGATCAG GAAATATCTAGTAGAGGCCACGAAAGAAGCATCCAATTCTTATACTGAAGCEST: gi|89167956|gb|CI109160.1|CI109160
genomic: TTGCGTGACACCTATACCAAGGAAACAGTACCGGCACTACATAGGATCAGgtaaagccag ... tttcttgcagGAAATATCTAGTAGAGGCCACGAAAGAAGCATCCAATTCTTATACTGAAGC
EST: TTGCGTGACACCTATACCAAGGAAACAGTACCGGCACTACATAGGATCAG GAAATATCTAGTAGAGGCCACGAAAGAAGCATCCAATTCTTATACTGAAGCEST: gi|163926568|gb|EG712432.1|EG712432
genomic: TTGCGTGACACCTATACCAAGGAAACAGTACCGGCACTACATAGGATCAGgtaaagccag ... tttcttgcagGAAATATCTAGTAGAGGCCACGAAAGAAGCATCCAATTCTTATACTGAAGC
EST: TTGCGTGACACCTATACCAAGGAAACAGTACCGGCACTACATAGGATCAG GAAATATCTAGTAGAGGCCACGAAAGAAGCATCCAATTCTTATACTGAAGCEST: gi|88221660|gb|CI221616.1|CI221616
genomic: TTGCGTGACACCTATACCAAGGAAACAGTACCGGCACTACATAGGATCAGgtaaagccag ... tttcttgcagGAAATATCTAGTAGAGGCCACGAAAGAAGCATCCAATTCTTATACTGAAGC
EST: TTGCGTGACACCTATACCAAGGATACAGTACCGGCACTACATAGGATCAG GAAATATGTAGTAGAGGCCACGAAAGAAGCATCCAATTCTTATACTGAAGCEST: gi|88281120|gb|CI402318.1|CI402318
genomic: TTGCGTGACACCTATACCAAGGAAACAGTACCGGCACTACATAGGATCAGgtaaagccag ... tttcttgcagGAAATATCTAGTAGAGGCCACGAAAGAAGCATCCAATTCTTATACTGAAGC
EST: CATAGGATCAG GAAATATCTAGTAGAGGCCACGAAAGAAGCATCCAATTCTTATACTGAAGCEST: gi|86503019|gb|CI145652.1|CI145652
genomic: CATAGGATCAGgtaaagccag ... tttcttgcagGAAATATCTAGTAGAGGCCACGAAAGAAGCATCCAATTCTTATACTGAAGC
EST: TTGCGTGACACCTAGACCAAGGAAACAGTACCGGCACTACATAGGATCAG GAAATATCTAGTAGAGGCCACGAAAGAAGCATCCAATTCTTATACTGAAGCEST: gi|86426368|gb|CI071465.1|CI071465
genomic: TTGCGTGACACCTATACCAAGGAAACAGTACCGGCACTACATAGGATCAGgtaaagccag ... tttcttgcagGAAATATCTAGTAGAGGCCACGAAAGAAGCATCCAATTCTTATACTGAAGC
EST: TTGCGTGACACCTATACCAAGGAAACAGTACCGGCACTACATAGGATCAG GAAANATCTAGTAGAGGCCACGAAAGAAGCATCCAATTCTTATACTGAAGC
genomic: TTGCGTGACACCTATACCAAGGAAACAGTACCGGCACTACATAGGATCAGgtaaagccag ... tttcttgcagGAAATATCTAGTAGAGGCCACGAAAGAAGCATCCAATTCTTATACTGAAGC
gagtgcttttcttttcaggaaaatgcattttttacttatttaccgtttcttgcagGAAATATCTAGTAGAGGCCACGAAAGAAGCATCCAATTCTTATACTGAAGCG
ccgtttctt CT-rich tract
aaaatgcattttttac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaagccagtttaattgatttaaaaaaaactgacatgatatcttgagttaagtggtacatcttctcaaaacagatccaatatgttgagtgcttttcttttcaggaaaatgcattttttacttatttaccgtttcttgcagGAAATATCTAGTAGAGGCCACGAAAGAAGCATCCAATTCTTATACTGAAGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC