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gtcggtactactacgtaccgttagttaattcctattcattgcctagttaaaattaactttaactgcatgcgaatatatatgcgatgcagGCCTGCCATCGTCAAAGCTCTAAGAACTGGAGCTCGGTCCATCATATTATATCTGTCGGTTCAAGATCATACTCCACTACATGAAGTCTAGATCGAGGTG
species | Oryza sativa |
transcript | LOC_Os02g01150.4 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TGCAACGCCGCCAGCTGCTTGCCCCAGCATTGTTAATGCCAAACAACTCG GCCTGCCATCGTCAAAGCTCTAAGAACTGGAGCTCGGTCCATCATATTATAEST: gi|58605093|gb|CK033126.1|CK033126
genomic: TGCAACGCCGCCAGCTGCTTGCCCCAGCATTGTTAATGCCAAACAACTCGgtcggtacta ... tgcgatgcagGCCTGCCATCGTCAAAGCTCTAAGAACTGGAGCTCGGTCCATCATATTATA
EST: TGCAACGCCGCCAGCTGCTTGCCCCAGCATTGTTAATGCCAAACAACTCG GCCTGCCATCGTCAAAGCTCTAAGAACTGGAGCTCGGTCCATCAEST: gi|24468876|gb|CA305825.1|CA305825
genomic: TGCAACGCCGCCAGCTGCTTGCCCCAGCATTGTTAATGCCAAACAACTCGgtcggtacta ... tgcgatgcagGCCTGCCATCGTCAAAGCTCTAAGAACTGGAGCTCGGTCCATCA
EST: TGCAACGCCGCCAGCTGCTTGCCCCAGCATTGTTAATGCCAAACAACTCG GCCTGCCATCGTCAAAGCTCTAAGAACTGGAGCTCGGTCCATCATATTATAEST: gi|58593170|gb|CF991478.1|CF991478
genomic: TGCAACGCCGCCAGCTGCTTGCCCCAGCATTGTTAATGCCAAACAACTCGgtcggtacta ... tgcgatgcagGCCTGCCATCGTCAAAGCTCTAAGAACTGGAGCTCGGTCCATCATATTATA
EST: TGCAACGCCGCCAGCTGCTTGGCCCAGCATTGTTAATGCCAAACAACTCG GCCTGCCATCGTCAAAGCTCTAAGAACTGGAGCTCGGTCCATCATATTATA
genomic: TGCAACGCCGCCAGCTGCTTGCCCCAGCATTGTTAATGCCAAACAACTCGgtcggtacta ... tgcgatgcagGCCTGCCATCGTCAAAGCTCTAAGAACTGGAGCTCGGTCCATCATATTATA
ttcattgcctagttaaaattaactttaactgcatgcgaatatatatgcgatgcagGCCTGCCATCGTCAAAGCTCTAAGAACTGGAGCTCGGTCCATCATATTATATCTGTCGGTTCAAGATCATACTCCACTACATGAAGTCTAGATCGAGGTG
tagttaaaattaactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcggtactactacgtaccgttagttaattcctattcattgcctagttaaaattaactttaactgcatgcgaatatatatgcgatgcagGCCTGCCATCGTCAAAGCTCTAAGAACTGGAGCTCGGTCCATCATATTATATCTGTCGGTTCAAGATCATACTCCACTACATGAAGTCTAGATCGAGGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA