1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...gaggtttatgtttgtggtgtttttcattcagttgcatcactacattttatgcagagtcattaacaaagagatgtttatgcatataccttttcatttgcagTATTCACGAGCCAACTCAAGGGAGGAGAAGCGGGATTTGTTCTTTGTTCTATTTGACTATGTATTGCATCAAATAAATGAAACATTCTTGGCTGGCGGCC
species | Oryza sativa |
transcript | LOC_Os01g74310.3 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TTCCTGACCAGATAGATCGCGTTGGTGGAGTTGACTATATCTGTCTCGAG TATTCACGAGCCAACTCAAGGGAGGAGAAGCGGGATTTGTTCTTTGTTCTAEST: gi|88395645|gb|CI590660.1|CI590660
genomic: TTCCTGACCAGATAGATCGCGTTGGTGGAGTTGACTATATCTGTCTCGAGgttagtttta ... tcatttgcagTATTCACGAGCCAACTCAAGGGAGGAGAAGCGGGATTTGTTCTTTGTTCTA
EST: TTCCTGACCAGATAGATCGCGTTGGTGGAGTTGACTATATCTGTCTCGAG TATTCACGAGCCAACTCAAGGGAGGAGAAGCGGGATTTGTTCTTTGTTCTAEST: gi|29675980|gb|CB672255.1|CB672255
genomic: TTCCTGACCAGATAGATCGCGTTGGTGGAGTTGACTATATCTGTCTCGAGgttagtttta ... tcatttgcagTATTCACGAGCCAACTCAAGGGAGGAGAAGCGGGATTTGTTCTTTGTTCTA
EST: GTTGACTATATCTGCCTCTAG TATTCACGAGCCAACTCAAGGGAGGAGAAGCGGGATTTGTTCTTTGTTCTA
genomic: GTTGACTATATCTGTCTCGAGgttagtttta ... tcatttgcagTATTCACGAGCCAACTCAAGGGAGGAGAAGCGGGATTTGTTCTTTGTTCTA
tttatgcagagtcattaacaaagagatgtttatgcatataccttttcatttgcagTATTCACGAGCCAACTCAAGGGAGGAGAAGCGGGATTTGTTCTTTGTTCTATTTGACTATGTATTGCATCAAATAAATGAAACATTCTTGGCTGGCGGCC
cattaac putative branch site (score: 2)
ccttttcattt putative PPT
attaacaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaggtttatgtttgtggtgtttttcattcagttgcatcactacattttatgcagagtcattaacaaagagatgtttatgcatataccttttcatttgcagTATTCACGAGCCAACTCAAGGGAGGAGAAGCGGGATTTGTTCTTTGTTCTATTTGACTATGTATTGCATCAAATAAATGAAACATTCTTGGCTGGCGGCC
- - -ttatgtt
- - - - - - tgtggtg
- - - - - - - - - - - - cattcag
- - - - - - - - - - - - - - - - tgcatca
- - - - - - - - - - - - - - - - - - - - - - - ttatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taacaaa