1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tttctacataagcacacaactttaaagcaaaagttataaattgaaccaagcgtaagagtaaaagggcaaccttttcacggatactaaatttatgttgcagATCGACAGAAACCTCTCGTTTCTAAATGGTTATGTGCAGCAAGCCATTGAAAATGGTGCTGCACCCTACATTCCTGAGAGTGAACGCTCAGGAGTGGTAA
species | Oryza sativa |
transcript | LOC_Os01g68750.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AGGCTGTTGAGAATGTAATGCCAGCCGATGCAAGCTGCGAAGATATTGAG ATCGACAGAAACCTCTCGTTTCTAAATGGTTATGTGCAGCAAGCCATTGAAEST: gi|88267405|gb|CI379340.1|CI379340
genomic: AGGCTGTTGAGAATGTAATGCCAGCCGATGCAAGCTGCGAAGATATTGAGgtactgctat ... tatgttgcagATCGACAGAAACCTCTCGTTTCTAAATGGTTATGTGCAGCAAGCCATTGAA
EST: AGGCTGTTGAGAATGTAATGCCAGCCGATGCAAGCTGCGAAGATATTGAG ATCGACAGAAACCTCTCGTTTCTAAATGGTTATGTGCAGCAAGCCATTGAAEST: gi|29676015|gb|CB672290.1|CB672290
genomic: AGGCTGTTGAGAATGTAATGCCAGCCGATGCAAGCTGCGAAGATATTGAGgtactgctat ... tatgttgcagATCGACAGAAACCTCTCGTTTCTAAATGGTTATGTGCAGCAAGCCATTGAA
EST: AGGCTGTTGAGAATGTAATGCCAGCCGATGCAAGCTGCGAAGATATTGAG ATCGACAGAAACCTCTCGTTTCTAAATGGTTATGTGCAGCAAGCCATTGAAEST: gi|218502014|gb|FG949172.1|FG949172
genomic: AGGCTGTTGAGAATGTAATGCCAGCCGATGCAAGCTGCGAAGATATTGAGgtactgctat ... tatgttgcagATCGACAGAAACCTCTCGTTTCTAAATGGTTATGTGCAGCAAGCCATTGAA
EST: AGGCTGTTGAGAATGTAATGCCAGCCGATGCAAGCTGCGAAGATATTGAG ATCGACAGAAACCTCTCGTTTCTAAATGGTTATGTGCAGCAAGCCTTTGAAEST: gi|58667905|gb|CK056591.1|CK056591
genomic: AGGCTGTTGAGAATGTAATGCCAGCCGATGCAAGCTGCGAAGATATTGAGgtactgctat ... tatgttgcagATCGACAGAAACCTCTCGTTTCTAAATGGTTATGTGCAGCAAGCCATTGAA
EST: AGGCTGTTGAGAATGTAATGCCAGCCGATGCAAGCTGCGAAGATATTGAG ATCGACAGAAACCTCTCGTTTCTAAATGGTTATGTGCAGCAAGCCTTTGAAEST: gi|29667842|gb|CB664117.1|CB664117
genomic: AGGCTGTTGAGAATGTAATGCCAGCCGATGCAAGCTGCGAAGATATTGAGgtactgctat ... tatgttgcagATCGACAGAAACCTCTCGTTTCTAAATGGTTATGTGCAGCAAGCCATTGAA
EST: AGGCTGTTGAGAATGTAATGCCAGCCGATGCAAGCTGCGAAGATATTGAG ATCGACAGAAACCTCTCGTTTCTAAATGGTTATGTGCAGCAAGCCATTGAAEST: gi|29666351|gb|CB662626.1|CB662626
genomic: AGGCTGTTGAGAATGTAATGCCAGCCGATGCAAGCTGCGAAGATATTGAGgtactgctat ... tatgttgcagATCGACAGAAACCTCTCGTTTCTAAATGGTTATGTGCAGCAAGCCATTGAA
EST: AGGCTGTTGAGAATGTAATGCCAGCCGATGCAAGCTGCGAAGATATTGAG ATCGACAGAAACCTCTCGTTTCTAAATGGTTATGTGCAGCAAGCCATTGAAEST: gi|88265793|gb|CI376695.1|CI376695
genomic: AGGCTGTTGAGAATGTAATGCCAGCCGATGCAAGCTGCGAAGATATTGAGgtactgctat ... tatgttgcagATCGACAGAAACCTCTCGTTTCTAAATGGTTATGTGCAGCAAGCCATTGAA
EST: AGGCTGTTGAGAATGTAATGCCAGCCGATGCAAGCTGCGAAGATATTGAG ATCGACAGAAACCTCTCGTTTCTAAATGGTTATGTGCAGCAAGCCATTGAAEST: gi|58656135|gb|CK044815.1|CK044815
genomic: AGGCTGTTGAGAATGTAATGCCAGCCGATGCAAGCTGCGAAGATATTGAGgtactgctat ... tatgttgcagATCGACAGAAACCTCTCGTTTCTAAATGGTTATGTGCAGCAAGCCATTGAA
EST: AGGCTGTTGAGAATGTAATGCCAGCCGATGCAAGCTGCGAAGATATTGAG ATCGACAGAAACCTCTCGTTTCTAAATGG
genomic: AGGCTGTTGAGAATGTAATGCCAGCCGATGCAAGCTGCGAAGATATTGAGgtactgctat ... tatgttgcagATCGACAGAAACCTCTCGTTTCTAAATGG
ccaagcgtaagagtaaaagggcaaccttttcacggatactaaatttatgttgcagATCGACAGAAACCTCTCGTTTCTAAATGGTTATGTGCAGCAAGCCATTGAAAATGGTGCTGCACCCTACATTCCTGAGAGTGAACGCTCAGGAGTGGTAA
tactaaa putative branch site (score: 9)
atactaaatttatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttctacataagcacacaactttaaagcaaaagttataaattgaaccaagcgtaagagtaaaagggcaaccttttcacggatactaaatttatgttgcagATCGACAGAAACCTCTCGTTTCTAAATGGTTATGTGCAGCAAGCCATTGAAAATGGTGCTGCACCCTACATTCCTGAGAGTGAACGCTCAGGAGTGGTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - cacacaa
- - - - - - - - - - - -aaagcaa
- - - - - - - - - - - - - - - - - - - - - gaaccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - agtaaaa