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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattaaatgcattctttggtaaatttcctttgagattccctcgactgcttgattgacataagtcaattttcattgattggagGTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGATATGTGTTCCAAGTTTAGCTTCGACTTGGAGAATGGTTTGTCCAGTGTTA

Basic information

species Oryza sativa
transcript LOC_Os01g68320.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88669512|gb|CI723430.1|CI723430
EST:     GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTAT-CCGATAG                         GTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
genomic: GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTATACCGATAGgtattaaatg ... ttgattggagGTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
EST: gi|88674504|gb|CI728617.1|CI728617
EST:     GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTAT-CCGATAG                         GTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
genomic: GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTATACCGATAGgtattaaatg ... ttgattggagGTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
EST: gi|88565599|gb|CI496316.1|CI496316
EST:     CCATACTGAGGGGCGGCAAAAAGATTAAAACTTTTACTGTAT-CCGATAG                         GTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
genomic: CCATACTGA-GGGCGGCAAAAAGATTAAAACTTTTACTGTATACCGATAGgtattaaatg ... ttgattggagGTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
EST: gi|29643632|gb|CB648639.1|CB648639
EST:     GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTATACCGATAG                         GTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
genomic: GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTATACCGATAGgtattaaatg ... ttgattggagGTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
EST: gi|29678104|gb|CB674379.1|CB674379
EST:     GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTATACCGATAG                         GTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
genomic: GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTATACCGATAGgtattaaatg ... ttgattggagGTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
EST: gi|88429964|gb|CI562775.1|CI562775
EST:     GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTATACCGATAG                         GTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
genomic: GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTATACCGATAGgtattaaatg ... ttgattggagGTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
EST: gi|2431511|gb|C73931.1|C73931
EST:     GCCATACNGAGGGCGGCAAAAAGATTAAAACTTTTACTGTATACCGATAG                         GTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
genomic: GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTATACCGATAGgtattaaatg ... ttgattggagGTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
EST: gi|86860514|gb|CI323438.1|CI323438
EST:     GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTATACCGATAG                         GTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
genomic: GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTATACCGATAGgtattaaatg ... ttgattggagGTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
EST: gi|88568249|gb|CI498966.1|CI498966
EST:     GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTAT-CCGATAG                         NTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
genomic: GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTATACCGATAGgtattaaatg ... ttgattggagGTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
EST: gi|89171828|gb|CI720887.1|CI720887
EST:     GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTAT-CCGATAG                         GTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
genomic: GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTATACCGATAGgtattaaatg ... ttgattggagGTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
EST: gi|88670224|gb|CI723472.1|CI723472
EST:     GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTAT-CCGATAG                         GTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
genomic: GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTATACCGATAGgtattaaatg ... ttgattggagGTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
EST: gi|88293935|gb|CI510243.1|CI510243
EST:     GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTAT-CCGATAG                         GTGGNACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
genomic: GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTATACCGATAGgtattaaatg ... ttgattggagGTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
EST: gi|89178234|gb|CI391413.1|CI391413
EST:     GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTATACCGATAG                         GTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
genomic: GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTATACCGATAGgtattaaatg ... ttgattggagGTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
EST: gi|29661778|gb|CB658053.1|CB658053
EST:     GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTATACCGATAG                         GTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
genomic: GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTATACCGATAGgtattaaatg ... ttgattggagGTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
EST: gi|89171808|gb|CI720867.1|CI720867
EST:     GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTAT-CCGATAG                         GTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
genomic: GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTATACCGATAGgtattaaatg ... ttgattggagGTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
EST: gi|88480999|gb|CI418270.1|CI418270
EST:     GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTATACCGATAG                         GTGGAACATTTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
genomic: GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTATACCGATAGgtattaaatg ... ttgattggagGTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
EST: gi|88418639|gb|CI504263.1|CI504263
EST:     GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTNTAT-CCGATAG                         GTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
genomic: GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTATACCGATAGgtattaaatg ... ttgattggagGTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
EST: gi|58685731|gb|CK074418.1|CK074418
EST:     GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTATACCGATAG                         GTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
genomic: GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTATACCGATAGgtattaaatg ... ttgattggagGTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
EST: gi|29633339|gb|CB638348.1|CB638348
EST:     GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTATACCGATAG                         GTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
genomic: GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTATACCGATAGgtattaaatg ... ttgattggagGTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
EST: gi|88486606|gb|CI423877.1|CI423877
EST:     GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTATACCGATAG                         GTGGACCATNTCACACGAATGGCCANATATACTTATCCCACAGCGTAGGAT
genomic: GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTATACCGATAGgtattaaatg ... ttgattggagGTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
EST: gi|88514918|gb|CI442572.1|CI442572
EST:     GCCATACTGAGGGCGGCCAAAAGATTAAAACTTTTACTGTATACCGATAG                         GTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
genomic: GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTATACCGATAGgtattaaatg ... ttgattggagGTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
EST: gi|55411539|gb|CV723915.1|CV723915
EST:     GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTATACCGATAG                         GTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
genomic: GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTATACCGATAGgtattaaatg ... ttgattggagGTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
EST: gi|88467822|gb|CI509637.1|CI509637
EST:     GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTAT-CCGATAG                         GTGGAACATTTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
genomic: GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTATACCGATAGgtattaaatg ... ttgattggagGTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
EST: gi|88456275|gb|CI560878.1|CI560878
EST:     GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTATACCGATAG                         GTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
genomic: GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTATACCGATAGgtattaaatg ... ttgattggagGTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
EST: gi|88304503|gb|CI518159.1|CI518159
EST:     GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTATACCGATAG                         GTGGGACATTTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
genomic: GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTATACCGATAGgtattaaatg ... ttgattggagGTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
EST: gi|88505927|gb|CI433433.1|CI433433
EST:     GCCATACTGAGGNCGGCAAAAAGATTAAAACTTTTACTGTATACCGATAG                         GTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
genomic: GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTATACCGATAGgtattaaatg ... ttgattggagGTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
EST: gi|88467670|gb|CI507095.1|CI507095
EST:     GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTAT-CCGATAG                         GTGGAACATGTCACACGAATGGCCNAATATACTTATCCNACAGCGTAGGAT
genomic: GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTATACCGATAGgtattaaatg ... ttgattggagGTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
EST: gi|89172383|gb|CI721442.1|CI721442
EST:     GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTAT-CCGATAG                         GTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
genomic: GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTATACCGATAGgtattaaatg ... ttgattggagGTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
EST: gi|88548417|gb|CI476788.1|CI476788
EST:     GCCATAGTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTATACCGATAG                         GTGGAACATGTCACACGAATGGCCAAATATACTTATCCCACAGCGTAGGAT
genomic: GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTATACCGATAGgtattaaatg ... ttgattggagGTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
EST: gi|218490541|gb|FG963338.1|FG963338
EST:     GCCATACTGAGGGCGGCTAAAAGATTCAAACTTTTACTGTATACCGATAG                         GTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
genomic: GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTATACCGATAGgtattaaatg ... ttgattggagGTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
EST: gi|88674786|gb|CI728899.1|CI728899
EST:     GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTAT-CCGATAG                         GTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
genomic: GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTATACCGATAGgtattaaatg ... ttgattggagGTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
EST: gi|88470527|gb|CI407798.1|CI407798
EST:     GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTATACCGATAG                         GTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
genomic: GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTATACCGATAGgtattaaatg ... ttgattggagGTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
EST: gi|15008370|gb|AU222758.1|AU222758
EST:     GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTATACCGATAG                         GTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
genomic: GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTATACCGATAGgtattaaatg ... ttgattggagGTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
EST: gi|88446842|gb|CI528885.1|CI528885
EST:     GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTATACCGATAG                         GTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
genomic: GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTATACCGATAGgtattaaatg ... ttgattggagGTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
EST: gi|88973846|gb|CI718254.1|CI718254
EST:     GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTAT-CCGATAG                         GTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
genomic: GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTATACCGATAGgtattaaatg ... ttgattggagGTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
EST: gi|86869051|gb|CI335618.1|CI335618
EST:     GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTATACCGATAG                         GTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
genomic: GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTATACCGATAGgtattaaatg ... ttgattggagGTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
EST: gi|88266160|gb|CI377062.1|CI377062
EST:     GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTATACCGATAG                         GTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
genomic: GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTATACCGATAGgtattaaatg ... ttgattggagGTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
EST: gi|88980895|gb|CI021022.1|CI021022
EST:     GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTATACCGATAG                         GTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
genomic: GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTATACCGATAGgtattaaatg ... ttgattggagGTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
EST: gi|29662446|gb|CB658721.1|CB658721
EST:     GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTATTCCGATAG                         GTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
genomic: GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTATACCGATAGgtattaaatg ... ttgattggagGTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
EST: gi|88379432|gb|CI511149.1|CI511149
EST:     GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTAT-CCGATAG                         GTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGGCGTAGGA
genomic: GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTATACCGATAGgtattaaatg ... ttgattggagGTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACA-GCGTAGGA
EST: gi|88261652|gb|CI365228.1|CI365228
EST:     GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTATACCGATAG                         GTGGAACATGTCACACGAATGCCCAAATATACTTATCCAACAGCGTAGGAT
genomic: GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTATACCGATAGgtattaaatg ... ttgattggagGTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
EST: gi|88982709|gb|CI028122.1|CI028122
EST:     GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTATACCGATAG                         GTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
genomic: GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTATACCGATAGgtattaaatg ... ttgattggagGTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
EST: gi|86878096|gb|CI328626.1|CI328626
EST:     GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTATACCGATAG                         GTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
genomic: GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTATACCGATAGgtattaaatg ... ttgattggagGTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
EST: gi|88257882|gb|CI360468.1|CI360468
EST:     GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTATACCGATAG                         GTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
genomic: GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTATACCGATAGgtattaaatg ... ttgattggagGTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
EST: gi|29669297|gb|CB665572.1|CB665572
EST:     GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTATACCGATAG                         GTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
genomic: GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTATACCGATAGgtattaaatg ... ttgattggagGTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
EST: gi|88440085|gb|CI546380.1|CI546380
EST:     GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTATACCGATAG                         GTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT
genomic: GCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTATACCGATAGgtattaaatg ... ttgattggagGTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttgagattccctcgactgcttgattgacataagtcaattttcattgattggagGTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGATATGTGTTCCAAGTTTAGCTTCGACTTGGAGAATGGTTTGTCCAGTGTTA
                                       ttttcatt  CT-rich tract
                                     aattttcattgatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtattaaatgcattctttggtaaatttcctttgagattccctcgactgcttgattgacataagtcaattttcattgattggagGTGGAACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGATATGTGTTCCAAGTTTAGCTTCGACTTGGAGAATGGTTTGTCCAGTGTTA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA