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gtcagaactgatctctctctctctctctctctctctcgtgtaaattctgtggattatgtcctaacatatcatgtcaacatttttgcagGCCGCATCTGAGTGGCTTTTCATAGTTCCTTGGGGCCTCCGGAAATTACTTAATTATGCAGCAAAGAGATATGGAAATCCTGTGATATATGTAACTGAGA
species | Oryza sativa |
transcript | LOC_Os01g67220.3 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GTTTACTTTTTGCAGAAAAATGGAACACCGGTGAAAAAATTGGTGAAAGG GCCGCATCTGAGTGGCTTTTCATAGTTCCTTGGGGCCTCCGGAAATTACTTEST: gi|25806962|gb|CA762923.1|CA762923
genomic: GTTTACTTTTTGCAGAAAAATGGAACACTGGTGAAAAAATTGGTGAAAGGgtcagaactg ... atttttgcagGCCGCATCTGAGTGGCTTTTCATAGTTCCTTGGGGCCTCCGGAAATTACTT
EST: AGAAAAATGGAACACCGGGTGAAAAAATTGGTGAAAGG GCCGCATTTGAGTGGCTTTTCATAGTTCCTTGGGGCCTCCGGAAATTACTT
genomic: AGAAAAATGGAACA-CTGGTGAAAAAATTGGTGAAAGGgtcagaactg ... atttttgcagGCCGCATCTGAGTGGCTTTTCATAGTTCCTTGGGGCCTCCGGAAATTACTT
tctcgtgtaaattctgtggattatgtcctaacatatcatgtcaacatttttgcagGCCGCATCTGAGTGGCTTTTCATAGTTCCTTGGGGCCTCCGGAAATTACTTAATTATGCAGCAAAGAGATATGGAAATCCTGTGATATATGTAACTGAGA
tcctaac putative branch site (score: 1)
cattttt putative PPT
aacattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagaactgatctctctctctctctctctctctctcgtgtaaattctgtggattatgtcctaacatatcatgtcaacatttttgcagGCCGCATCTGAGTGGCTTTTCATAGTTCCTTGGGGCCTCCGGAAATTACTTAATTATGCAGCAAAGAGATATGGAAATCCTGTGATATATGTAACTGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA