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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtcctcaactcattttgttctattgttattttatattatctgtttactttcaattattgttatgtggacaattcgatctgctatgctgaagtatctcacctccattgtttctgtttggaacagCCTAGTTATAATGATCCAAGCAGTTTGTTTGGTTTCCAGCAACCTGGAGGTAAGACATTCCACTGTTCCTTGATTTGTTTGTTATCCATTTTTTCTATAT

Basic information

species Oryza sativa
transcript LOC_Os01g64770.5
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58685647|gb|CK074334.1|CK074334
EST:     ATTTCACAAATCCATCTTTGCCTACAGAACAACGCTCAAGATCATCTCAG                         CCTAGTTATAATGATCCAAGCAGTTTGTTTGGTTTCCAGCAACCTGGAGGT
genomic: ATTTCACAAATCCATCTTTGCCTACAGAACAACGCTCAAGATCATCTCAGgtatgtcctc ... tttggaacagCCTAGTTATAATGATCCAAGCAGTTTGTTTGGTTTCCAGCAACCTGGAGGT
EST: gi|58653451|gb|CK042131.1|CK042131
EST:     ATTTCACAAATCCATCTTTGCCTACAGAACAACGCTCAAGATCATCTCAG                         CCTAGTTATAATGATCCAAGCAGTTTGTTTGGTTTCCAGCAACCTGGAGGT
genomic: ATTTCACAAATCCATCTTTGCCTACAGAACAACGCTCAAGATCATCTCAGgtatgtcctc ... tttggaacagCCTAGTTATAATGATCCAAGCAGTTTGTTTGGTTTCCAGCAACCTGGAGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caattcgatctgctatgctgaagtatctcacctccattgtttctgtttggaacagCCTAGTTATAATGATCCAAGCAGTTTGTTTGGTTTCCAGCAACCTGGAGGTAAGACATTCCACTGTTCCTTGATTTGTTTGTTATCCATTTTTTCTATAT
                        atctcac  putative branch site (score: 3)
                                       tttctgttt  putative PPT
                                   attgttt  TA-rich tract