Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttatttcttcattcatttcatcttgattaaaacagcatgcatgtttagtattagcatcttgagttcttgaatcctgatacattgttcaaacttgttgctacattggcaatgcagGCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTTGGAAGCTTCGAAGATGTGGAGGAGATCAAAGGGTTGTACGCTGCACAGG

Basic information

species Oryza sativa
transcript LOC_Os01g64660.3
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g64660.4 (Oryza sativa), 3'ss of exon 9
lower sequence: GRMZM5G836250_T03 (Zea mays), 3'ss of exon 10
-----gtacttatttcttcattcatttcatcttgattaaaacagcatgcatgtttagtattagcatcttgagttcttgaatcctgatacattgttcaaac-ttgttgctacattggca----atgcagGCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTTGGAAGCTTCGAAGATGTGGAGGAGATCAAAGGGTTGTACGCTGCACAGG
     ||       ||| ||||   |  |     |  ||| ||       |   | ||  ||| ||    | | ||||    ||  | | | |||         ||| | ||||||||    |||||||||||||| ||  | || |||||||| ||||| || ||||| ||||| || ||||||| ||| || |||||||||||||||| ||||||||| |  ||||
gtagggtttacgcctctccatttcctatacaaaaaaaaaagcacttctgctccctcgtcatagaatag-aactgcttgttcacttctgcttggtttgggtacctttgatgcattggcactgcatgcagGCTCTTGATCTGATCCCAACCAAGATCCACGACAGGTCCCCGATATTCCTCGGAAGCTACGACGACGTGGAGGAGATCAAAGCGTTGTACGCCGAGCAGG

upper sequence: LOC_Os01g64660.4 (Oryza sativa), 3'ss of exon 9
lower sequence: EFJ25223 (Selaginella moellendorffii), 3'ss of exon 10
gtacttatttcttcattcatttcatcttgattaaaacagcatgcatgtttagtattagcatcttgagttcttgaatcctgatacattgttcaaacttgttgctacattggcaatgcagGCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTTGGAAGCTTCGAAGATGTGGAGGAGATCAAAGGGTTGTACGCTGCACAGG
                                                       ||  | ||||   | ||      | | ||||  ||     ||||  ||  |||     | ||||| |||||| | ||||| |  |||||||| ||||| || |||||||| ||||||||||| ||||| || || |||||||||    | ||    |||   |
------------------------------------------------------gtaagaacttgtactttt---ctttcacacatc-ttttgttttgtctcttgatt-----tacagGCACTTGACGTTGTTCCAAAAAAGATTCATGAGAGGTCACCAATATTCCTTGGAAGCTTTGAAGACGTTGAAGAGATCAAAACTCTCTATCACGCATCCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|38470545|gb|CF954676.1|CF954676
EST:     CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGG                         GCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
genomic: CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGGgtacttattt ... ggcaatgcagGCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
EST: gi|29686739|gb|CB683014.1|CB683014
EST:     CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGG                         GCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
genomic: CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGGgtacttattt ... ggcaatgcagGCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
EST: gi|29621610|gb|CB626621.1|CB626621
EST:     CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGG                         GCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
genomic: CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGGgtacttattt ... ggcaatgcagGCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
EST: gi|86524631|gb|CI164837.1|CI164837
EST:     CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGG                         GCTCTGGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
genomic: CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGGgtacttattt ... ggcaatgcagGCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
EST: gi|88529782|gb|CI458128.1|CI458128
EST:     CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGG                         GCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
genomic: CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGGgtacttattt ... ggcaatgcagGCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
EST: gi|88251080|gb|CI349310.1|CI349310
EST:     CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGG                         GCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
genomic: CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGGgtacttattt ... ggcaatgcagGCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
EST: gi|313079819|gb|HO213258.1|HO213258
EST:     CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGG                         GCTCTTGGCCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
genomic: CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGGgtacttattt ... ggcaatgcagGCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
EST: gi|86844563|gb|CI338579.1|CI338579
EST:     CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGG                         GCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
genomic: CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGGgtacttattt ... ggcaatgcagGCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
EST: gi|86834851|gb|CI345935.1|CI345935
EST:     CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGG                         GCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
genomic: CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGGgtacttattt ... ggcaatgcagGCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
EST: gi|58588683|gb|CF986991.1|CF986991
EST:     CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGG                         GCTCTTGAACTCGTTCCTAACAAGATTCACGAGAGATCCCCAATATTTCTT
genomic: CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGGgtacttattt ... ggcaatgcagGCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
EST: gi|88519728|gb|CI447382.1|CI447382
EST:     CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGG                         GCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
genomic: CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGGgtacttattt ... ggcaatgcagGCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
EST: gi|88536891|gb|CI464687.1|CI464687
EST:     CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGG                         GCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
genomic: CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGGgtacttattt ... ggcaatgcagGCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
EST: gi|86413542|gb|CI019127.1|CI019127
EST:     CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGG                         GCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
genomic: CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGGgtacttattt ... ggcaatgcagGCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
EST: gi|88254393|gb|CI353217.1|CI353217
EST:     CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACGGGCAAAGAACGG                         GCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAAATATTTCT
genomic: CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGGgtacttattt ... ggcaatgcagGCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCC-AATATTTCT
EST: gi|29688785|gb|CB685060.1|CB685060
EST:     CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGG                         CCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
genomic: CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGGgtacttattt ... ggcaatgcagGCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
EST: gi|88475867|gb|CI413138.1|CI413138
EST:     CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGG                         GCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
genomic: CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGGgtacttattt ... ggcaatgcagGCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
EST: gi|88504770|gb|CI432276.1|CI432276
EST:     CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGG                         GCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
genomic: CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGGgtacttattt ... ggcaatgcagGCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
EST: gi|38476059|gb|CF960192.1|CF960192
EST:     CAGTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGG                         GCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
genomic: CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGGgtacttattt ... ggcaatgcagGCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
EST: gi|88474700|gb|CI411971.1|CI411971
EST:     CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGG                         GCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
genomic: CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGGgtacttattt ... ggcaatgcagGCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
EST: gi|88283280|gb|CI404726.1|CI404726
EST:     CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGG                         GCTCTTGACCTCGTTCCTACCAAGATTCACGAGANATCCCCAATATTTCTT
genomic: CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGGgtacttattt ... ggcaatgcagGCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
EST: gi|88506218|gb|CI433724.1|CI433724
EST:     CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGG                         GCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
genomic: CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGGgtacttattt ... ggcaatgcagGCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
EST: gi|88476257|gb|CI413528.1|CI413528
EST:     CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGG                         GCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
genomic: CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGGgtacttattt ... ggcaatgcagGCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
EST: gi|88518162|gb|CI445816.1|CI445816
EST:     CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGG                         GCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
genomic: CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGGgtacttattt ... ggcaatgcagGCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
EST: gi|88510920|gb|CI438426.1|CI438426
EST:     CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGG                         GCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
genomic: CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGGgtacttattt ... ggcaatgcagGCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
EST: gi|89184643|gb|CI007068.1|CI007068
EST:     CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGG                         GCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
genomic: CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGGgtacttattt ... ggcaatgcagGCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
EST: gi|58031340|gb|CX728883.1|CX728883
EST:     CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGG                         GCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
genomic: CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGGgtacttattt ... ggcaatgcagGCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
EST: gi|33663176|gb|CF294143.1|CF294143
EST:     CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGG                         GCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
genomic: CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGGgtacttattt ... ggcaatgcagGCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
EST: gi|88478802|gb|CI416073.1|CI416073
EST:     CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGG                         GCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
genomic: CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGGgtacttattt ... ggcaatgcagGCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
EST: gi|29613014|gb|CB618027.1|CB618027
EST:     CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGG                         GCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
genomic: CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGGgtacttattt ... ggcaatgcagGCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
EST: gi|86833721|gb|CI337295.1|CI337295
EST:     CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGG                         GCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
genomic: CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGGgtacttattt ... ggcaatgcagGCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
EST: gi|88967746|gb|CI016261.1|CI016261
EST:     CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGG                         GCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
genomic: CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGGgtacttattt ... ggcaatgcagGCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
EST: gi|88489575|gb|CI426847.1|CI426847
EST:     CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGG                         GCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
genomic: CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGGgtacttattt ... ggcaatgcagGCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
EST: gi|88522820|gb|CI450613.1|CI450613
EST:     CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGG                         GCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
genomic: CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGGgtacttattt ... ggcaatgcagGCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
EST: gi|88533107|gb|CI460643.1|CI460643
EST:     CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGG                         GCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
genomic: CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGGgtacttattt ... ggcaatgcagGCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
EST: gi|88476483|gb|CI413754.1|CI413754
EST:     CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGG                         GCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
genomic: CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGGgtacttattt ... ggcaatgcagGCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
EST: gi|88555841|gb|CI486127.1|CI486127
EST:     CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGG                         GCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
genomic: CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGGgtacttattt ... ggcaatgcagGCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
EST: gi|29617760|gb|CB622772.1|CB622772
EST:     CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGG                         GCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
genomic: CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGGgtacttattt ... ggcaatgcagGCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
EST: gi|33820806|gb|CF336207.1|CF336207
EST:     CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGG                         GCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
genomic: CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGGgtacttattt ... ggcaatgcagGCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
EST: gi|27546650|gb|CA764792.2|CA764792
EST:     CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGG                         GCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
genomic: CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGGgtacttattt ... ggcaatgcagGCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
EST: gi|88488996|gb|CI426267.1|CI426267
EST:     CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGG                         GCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
genomic: CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGGgtacttattt ... ggcaatgcagGCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
EST: gi|88473302|gb|CI410573.1|CI410573
EST:     CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGG                         GCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
genomic: CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGGgtacttattt ... ggcaatgcagGCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
EST: gi|88473454|gb|CI410725.1|CI410725
EST:     CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGG                         GCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
genomic: CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGGgtacttattt ... ggcaatgcagGCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
EST: gi|88511085|gb|CI438591.1|CI438591
EST:     CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGG                         GCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
genomic: CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGGgtacttattt ... ggcaatgcagGCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
EST: gi|88251561|gb|CI349989.1|CI349989
EST:     CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGG                         GCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
genomic: CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGGgtacttattt ... ggcaatgcagGCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
EST: gi|89198621|gb|CI016706.1|CI016706
EST:     CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGG                         GCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
genomic: CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGGgtacttattt ... ggcaatgcagGCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
EST: gi|86874736|gb|CI318295.1|CI318295
EST:     CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGG                         GCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
genomic: CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGGgtacttattt ... ggcaatgcagGCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
EST: gi|29682614|gb|CB678889.1|CB678889
EST:     CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGG                         GCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
genomic: CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGGgtacttattt ... ggcaatgcagGCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
EST: gi|88543369|gb|CI473372.1|CI473372
EST:     CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGG                         GCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
genomic: CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGGgtacttattt ... ggcaatgcagGCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
EST: gi|88507647|gb|CI435153.1|CI435153
EST:     ATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGG                         GCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
genomic: ATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGGgtacttattt ... ggcaatgcagGCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
EST: gi|88480416|gb|CI417687.1|CI417687
EST:     TTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGG                         GCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
genomic: TTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGGgtacttattt ... ggcaatgcagGCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
EST: gi|38476585|gb|CF960718.1|CF960718
EST:     CATTCCTGATGGAGCAGGCTGGAGGNCAGTCTTTCACAGGCAAAGAACGG                         GCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
genomic: CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGGgtacttattt ... ggcaatgcagGCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
EST: gi|88481285|gb|CI418556.1|CI418556
EST:     CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGG                         GCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT
genomic: CATTCCTGATGGAGCAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGGgtacttattt ... ggcaatgcagGCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgagttcttgaatcctgatacattgttcaaacttgttgctacattggcaatgcagGCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTTGGAAGCTTCGAAGATGTGGAGGAGATCAAAGGGTTGTACGCTGCACAGG
            tcctgat  putative branch site (score: 3)
                 atacatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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gtacttatttcttcattcatttcatcttgattaaaacagcatgcatgtttagtattagcatcttgagttcttgaatcctgatacattgttcaaacttgttgctacattggcaatgcagGCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAATATTTCTTGGAAGCTTCGAAGATGTGGAGGAGATCAAAGGGTTGTACGCTGCACAGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGATCA