1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtgttctgttgttatttaaaaataaataaactctgtccatatttttgtgaactttgctcacttggcatactgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTTGAGGAGATGGATGCTGATTAAGAGGAGACCCGACTATGTTCTACGTTTG
species | Oryza sativa |
transcript | LOC_Os01g59600.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTTEST: gi|88847361|gb|CI011304.1|CI011304
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTTEST: gi|88976521|gb|CI024666.1|CI024666
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTTEST: gi|12622989|gb|AU173202.1|AU173202
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTTEST: gi|86835538|gb|CI347995.1|CI347995
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTTEST: gi|163928912|gb|EG711949.1|EG711949
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTTEST: gi|88381429|gb|CI528409.1|CI528409
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTTEST: gi|86597380|gb|CI280517.1|CI280517
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTTEST: gi|33686422|gb|CF314661.1|CF314661
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTTEST: gi|88273185|gb|CI388641.1|CI388641
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTTEST: gi|86841716|gb|CI337401.1|CI337401
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTTEST: gi|88270098|gb|CI381396.1|CI381396
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTTEST: gi|29668732|gb|CB665007.1|CB665007
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTTEST: gi|86547135|gb|CI187341.1|CI187341
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTTEST: gi|88290894|gb|CI544991.1|CI544991
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTTEST: gi|88255608|gb|CI354432.1|CI354432
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTTEST: gi|86836032|gb|CI346125.1|CI346125
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTTEST: gi|163920473|gb|EG709578.1|EG709578
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTTEST: gi|8859855|gb|AU097173.1|AU097173
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTTEST: gi|86865028|gb|CI344565.1|CI344565
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTTEST: gi|8856768|gb|AU094086.1|AU094086
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTTEST: gi|33686717|gb|CF314956.1|CF314956
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTTEST: gi|88428139|gb|CI557033.1|CI557033
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTTEST: gi|86503973|gb|CI146606.1|CI146606
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTTEST: gi|88849220|gb|CI087742.1|CI087742
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTTEST: gi|88376281|gb|CI533183.1|CI533183
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTTEST: gi|88463261|gb|CI524571.1|CI524571
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: TGGATATGTGATGAATCAAGTGGCCAGCATCAGAAG GTTCCTGCTGATCTTTT-GAGGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTEST: gi|88255078|gb|CI353902.1|CI353902
genomic: TGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGA-GCAGGCCAAGGTTGCAGCTCAGGCAGCGCT
EST: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTTEST: gi|86543850|gb|CI184056.1|CI184056
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTTEST: gi|88484005|gb|CI421276.1|CI421276
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTTEST: gi|33692106|gb|CF320345.1|CF320345
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTTEST: gi|3761113|gb|C98361.1|C98361
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTTEST: gi|89193487|gb|CI050785.1|CI050785
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTTEST: gi|88465462|gb|CI520014.1|CI520014
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTTEST: gi|38480564|gb|CF964653.1|CF964653
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: TGTGATGAATCAAATCGCCAGCATCAGAAG GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTTEST: gi|86890281|gb|CI321458.1|CI321458
genomic: TGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTTEST: gi|88440146|gb|CI546441.1|CI546441
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTTEST: gi|88960050|gb|CI381928.1|CI381928
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTTEST: gi|86529979|gb|CI170185.1|CI170185
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG GTTCCTGCTGACCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTTEST: gi|86545852|gb|CI186058.1|CI186058
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTTEST: gi|88516644|gb|CI444298.1|CI444298
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTTEST: gi|87005762|gb|CI316181.1|CI316181
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTTEST: gi|88250600|gb|CI348830.1|CI348830
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTTEST: gi|86841231|gb|CI342961.1|CI342961
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTCCAGCTCAGGCAGCGCTTEST: gi|86870489|gb|CI320585.1|CI320585
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: AGTTGGAATTAAGCT-GATATGTGATGAATCAAATCGCCAGCATCAGAAG GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTTEST: gi|88987100|gb|CI034141.1|CI034141
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTTEST: gi|3762962|gb|AU029714.1|AU029714
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
aataaactctgtccatatttttgtgaactttgctcacttggcatactgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTTGAGGAGATGGATGCTGATTAAGAGGAGACCCGACTATGTTCTACGTTTG
tgctcac putative branch site (score: 2)
atatttttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgttctgttgttatttaaaaataaataaactctgtccatatttttgtgaactttgctcacttggcatactgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTTGAGGAGATGGATGCTGATTAAGAGGAGACCCGACTATGTTCTACGTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA