Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ataaccattaaacggaataccaagaaatagacatagagaaatgtatatttctgttgcaaattgtaacttttggtgaactataacgatgccttatctgcagGCTGATAATCTGCGGCTTCAGACTCTTCAGCAAATGCAGCGCATATTAACCACTCGCCAGTCAGCACGAGCTCTACTTGCAATAAGTGACTACTTCTCCC

Basic information

species Oryza sativa
transcript LOC_Os01g59350.2
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g59350.2 (Oryza sativa), 3'ss of exon 10
lower sequence: GRMZM2G019907_T02 (Zea mays), 3'ss of exon 8
ataaccattaaacggaataccaagaaatagacatagagaaatgtatatttctgttgcaaattgtaacttttggtgaactataacgatgccttatctgcagGCTGATAATCTGCGGCTTCAGACTCTTCAGCAAATGCAGCGCATATTAACCACTCGCCAGTCAGCACGAGCTCTACTTGCAATAAGTGACTACTTCTCCC--------------------------------------
                                                                                                                                                 |||||||| || || || |||||||| |||||||||||||| ||||||||||| |                                      
------------------------------------------------------------------------------------------------------------------------------------------------tTTAACCACCCGACAATCCGCACGAGCCCTACTTGCAATAAGCGACTACTTCTCTCGGCTGCGTGCTTTGAGTTCTCTTTGGCTTGCCCGTCCA

upper sequence: LOC_Os01g59350.2 (Oryza sativa), 3'ss of exon 10
lower sequence: GRMZM2G019907_T02 (Zea mays), 3'ss of exon 7
----ataaccattaaacggaataccaagaaatagacat--agagaaatgtatatttctgttgcaaattgtaacttttggtgaactataacgatgccttatctgcagGCTGATAATCTGCGGCTTCAGACTCTTCAGCAAATGCAGCGCATATTAACCACTCGCCAGTCAGCACGAGCTCTACTTGCAATAAGTGACTACTTCTCCC
    ||   || | | |    || || |||||   |||  | |  ||  |     | | | ||||   | |     |  |    | | || ||| |   |||||||||||||||||| ||||| || || ||||| |||||||| |||||                                                        
ttcgatttgcagtgatctctttagca-gaaatcttcatcaaaaagaactttagcatatatagcaag--gaagtacataattt-ttttgacaatgtc--gtctgcagGCTGATAATCTACGGCTGCAAACACTTCAACAAATGCAACGCATC-------------------------------------------------------

upper sequence: LOC_Os01g59350.2 (Oryza sativa), 3'ss of exon 10
lower sequence: GRMZM2G125243_T02 (Zea mays), 3'ss of exon 12
ataaccattaaacggaatacc---aagaaatagacatagagaaatgtatatttctgttgcaaattgtaacttttggtgaactataacgatgccttatctgcagGCTGATAATCTGCGGCTTCAGACTCTTCAGCAAATGCAGCGCATATTAACCACTCGCCAGTCAGCACGAGCTCTACTTGCAATAAGTGACTACTTCTCCC
||    |||  | |   | ||   |  | |||    ||   |||    | || | |    |    | || |     |    | |||| ||| |  ||||||||||||||||||| ||||| || || ||||| |||||||| ||||| ||||| || || || ||||||||||| ||||| |||||||||||||||||||| |
attttgatttgaagtggtccctttagcagatatctttatcaaaagaacttttgcagacatagcaaggaagtacacattt-ttttaacaatgtc--atctgcagGCTGATAATCTACGGCTGCAAACACTTCAACAAATGCAACGCATCTTAACTACCCGACAATCAGCACGAGCCCTACTCGCAATAAGTGACTACTTCTCTC

upper sequence: LOC_Os01g59350.2 (Oryza sativa), 3'ss of exon 10
lower sequence: GRMZM2G019907_T01 (Zea mays), 3'ss of exon 6
----ataaccattaaacggaataccaagaaatagacat--agagaaatgtatatttctgttgcaaattgtaacttttggtgaactataacgatgccttatctgcagGCTGATAATCTGCGGCTTCAGACTCTTCAGCAAATGCAGCGCATATT-AACCACTCGCCAGTCAGCACGAGCTCTACTTGCAATAAGTGACTACTTCTCCC
    ||   || | | |    || || |||||   |||  | |  ||  |     | | | ||||   | |     |  |    | | || ||| |   |||||||||||||||||| ||||| || || ||||| |||||||| ||||| || |||||| || || || |||||||| |||||||||||||| |||||||||||  
ttcgatttgcagtgatctctttagca-gaaatcttcatcaaaaagaactttagcatatatagcaag--gaagtacataattt-ttttgacaatgtc--gtctgcagGCTGATAATCTACGGCTGCAAACACTTCAACAAATGCAACGCATCTTTAACCACCCGACAATCCGCACGAGCCCTACTTGCAATAAGCGACTACTTCTCT-

upper sequence: LOC_Os01g59350.2 (Oryza sativa), 3'ss of exon 10
lower sequence: Vv08s0007g05170.t01 (Vitis vinifera), 3'ss of exon 10
-------ataaccattaaacggaataccaagaaatagacatagagaaatgtatatttctgttgcaaattgtaacttttggtgaactataacgatgccttatctgcagGCTGATAATCTGCGGCTTCAGACTCTTCAGCAAATGCAGCGCATATTAACCACTCGCCAGTCAGCACGAGCTCTACTTGCAATAAGTGACTACTTCTCCC
       ||  || ||        |    |||| || |  |   || ||   | ||||  |||    ||     | || ||    | |   | ||    ||   ||||||||||||||||| |  ||||| || ||||| ||||| || ||||| || || || ||||| ||||| ||||| |||||||||| ||||||||||||||
ataacttatg-cctttttctattgtgaagagaagtaaaatttacgagataattttttccattgtctttt-----tcttagtctttttttttg-tggacaattatcagGCTGATAATCTGCGCCAGCAGACGCTACAGCAGATGCACCGTATATTGACAACCCGGCAGTCTGCACGTGCTCTTCTTGCAATAAATGACTACTTCTCCC

upper sequence: LOC_Os01g59350.2 (Oryza sativa), 3'ss of exon 10
lower sequence: PP1S30_324V6.2 (Physcomitrella patens), 3'ss of exon 8
--------------------------ataaccattaaacggaataccaagaaatagacatagagaaatgtatatttctgttgcaaattgtaacttttggtgaactataacgatgccttatctg-cagGCTGATAATCTGCGGCTTCAGACTCTTCAGCAAATGCAGCGCATATTAACCACTCGCCAGTCAGCACGAGCTCTACTTGCAATAAGTGACTACTTCTCCC
                          | |||  |     | | | ||      |  |      | ||| | |       |    |    |  || |  || ||   |||  |||     | |  |||||||||||  | || |  ||||| || ||||||||||| || |||||||||||||||||  |||| ||||  || ||||||||  | ||||||||  | |
gtacgccttcttttaatgttgctgtcagaactctcttttgtactgccctctgttgaaagcgccgtaatatcttgcctcatccatatgcttgcctatcagtaaaaattaaaaatggtggctgtaacagGCTGATAACTTACGACAACAGACGCTACAGCAAATGCACCGAATATTAACCACTCGCCAAGCAGCCCGAGGGCTCCTTGCAATGGGCGACTACTTTGCTC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88904796|gb|CI712095.1|CI712095
EST:     TGGCAATGGCTATGGGGAAACTTGGTACCCTAGAAAACTTCCTACGGCAG                         GCTGATAATCTGCGGCTTCAGACTCTTCAGCAAATGCAGCGCATATTAACC
genomic: TGGCAATGGCTATGGGGAAACTTGGTACCCTAGAAAACTTCCTACGGCAGgtaacttgta ... ttatctgcagGCTGATAATCTGCGGCTTCAGACTCTTCAGCAAATGCAGCGCATATTAACC
EST: gi|88977835|gb|CI384317.1|CI384317
EST:     TGGCAATGGCTATGGGGAAACTTGGTACCCTAGAAAACTTCCTACGGCAG                         GCTGATAATCTGCGGCTTCAGACTCTTCAGCAAATGCAGCGCATATTAACC
genomic: TGGCAATGGCTATGGGGAAACTTGGTACCCTAGAAAACTTCCTACGGCAGgtaacttgta ... ttatctgcagGCTGATAATCTGCGGCTTCAGACTCTTCAGCAAATGCAGCGCATATTAACC
EST: gi|88675030|gb|CI729143.1|CI729143
EST:     TGGCAATGGCTATGGGGAAACTTGGTACCCTAGAAAACTTCCTACGGCAG                         GCTGATAATCTGCGGCTTCAGACTCTTCAGCAAATGCAGCGCATATTAACC
genomic: TGGCAATGGCTATGGGGAAACTTGGTACCCTAGAAAACTTCCTACGGCAGgtaacttgta ... ttatctgcagGCTGATAATCTGCGGCTTCAGACTCTTCAGCAAATGCAGCGCATATTAACC
EST: gi|88828334|gb|CI000443.1|CI000443
EST:     TGGCAATGGCTATGGGGAAACTTGGTACCCTAGAAAACTTCCTACGGCAG                         GCTGATAATCTGCGGCTTCAGACTCTTCAGCAAATGCAGCGCATATTAACC
genomic: TGGCAATGGCTATGGGGAAACTTGGTACCCTAGAAAACTTCCTACGGCAGgtaacttgta ... ttatctgcagGCTGATAATCTGCGGCTTCAGACTCTTCAGCAAATGCAGCGCATATTAACC
EST: gi|88676061|gb|CI730174.1|CI730174
EST:     TGGCAATGGCTATGGGGAAACTTGGTACCCTAGAAAACTTCCTACGGCAG                         GCTGATAATCTGCGGCTTCAGACTCTTCAGCAAATGCAGCGCATATTAACC
genomic: TGGCAATGGCTATGGGGAAACTTGGTACCCTAGAAAACTTCCTACGGCAGgtaacttgta ... ttatctgcagGCTGATAATCTGCGGCTTCAGACTCTTCAGCAAATGCAGCGCATATTAACC
EST: gi|89162155|gb|CI103691.1|CI103691
EST:     TGGCAATGGCTATGGGGAAACTTGGTACCCTAGAAAACTTCCTACGGCAG                         GCTGATAATCTGCGGCTTCAGACTCTTCAGCAAATGCAGCGCATATTAACC
genomic: TGGCAATGGCTATGGGGAAACTTGGTACCCTAGAAAACTTCCTACGGCAGgtaacttgta ... ttatctgcagGCTGATAATCTGCGGCTTCAGACTCTTCAGCAAATGCAGCGCATATTAACC
EST: gi|88285634|gb|CI509894.1|CI509894
EST:     GGAAACTTGGTACCCTAGAAAACTTCGTACGGCAG                         GCTGATAATCTGCGGCTTCAGACTCTTCAGCGAATGCAGCGCATATTAACC
genomic: GGAAACTTGGTACCCTAGAAAACTTCCTACGGCAGgtaacttgta ... ttatctgcagGCTGATAATCTGCGGCTTCAGACTCTTCAGCAAATGCAGCGCATATTAACC
EST: gi|88673189|gb|CI727303.1|CI727303
EST:     TGGCAATGGCTATGGGGAAACTTGGTACCCTACAAAACTTCCTACGGCAG                         GCTGATAATCTGCGGCTTCAGACTCTTCAGCAAATGCAGCGCATATTAACC
genomic: TGGCAATGGCTATGGGGAAACTTGGTACCCTAGAAAACTTCCTACGGCAGgtaacttgta ... ttatctgcagGCTGATAATCTGCGGCTTCAGACTCTTCAGCAAATGCAGCGCATATTAACC
EST: gi|58678890|gb|CK067577.1|CK067577
EST:     TGGCAATGGCTATGGGGAAACTTGGTACCCTAGAAAACTTCCTACGGCAG                         GCTGATAATCTGCGGCTTCAGACTCTTCAGCAAATGCAGCGCATATTAACC
genomic: TGGCAATGGCTATGGGGAAACTTGGTACCCTAGAAAACTTCCTACGGCAGgtaacttgta ... ttatctgcagGCTGATAATCTGCGGCTTCAGACTCTTCAGCAAATGCAGCGCATATTAACC
EST: gi|88225800|gb|CI225716.1|CI225716
EST:     TGGCAATGGCTATGGGGAAACTTGGTACCCTAGAAAACTTCCTACGGCAG                         GCTGATAATCTGCGGCTTCAGACTCTTCAGCAAATGCAGCGCATATTAACC
genomic: TGGCAATGGCTATGGGGAAACTTGGTACCCTAGAAAACTTCCTACGGCAGgtaacttgta ... ttatctgcagGCTGATAATCTGCGGCTTCAGACTCTTCAGCAAATGCAGCGCATATTAACC
EST: gi|89184952|gb|CI049498.1|CI049498
EST:     TGGCAATGGCTATGGGGAAACTTGGTACCCTAGAAAACTTCCTACGGCAG                         GCTGATAATCTGCGGCTTCAGACTCTTCAGCAAATGCAGCGCATATTAACC
genomic: TGGCAATGGCTATGGGGAAACTTGGTACCCTAGAAAACTTCCTACGGCAGgtaacttgta ... ttatctgcagGCTGATAATCTGCGGCTTCAGACTCTTCAGCAAATGCAGCGCATATTAACC
EST: gi|88673346|gb|CI726045.1|CI726045
EST:     TGGCAATGGCTATGGGGAAACTTGGTACCCTAGAAAACTTCCTACGGCAG                         GCTGATAATCTGCGGCTTCAGACTCTTCAGCAAATGCAGCGCATATTAACC
genomic: TGGCAATGGCTATGGGGAAACTTGGTACCCTAGAAAACTTCCTACGGCAGgtaacttgta ... ttatctgcagGCTGATAATCTGCGGCTTCAGACTCTTCAGCAAATGCAGCGCATATTAACC
EST: gi|88264048|gb|CI367822.1|CI367822
EST:     TGGCAATGGCTATGGGGAAACTTGGTACCCTAGAAAACTTCCTACGGCAG                         GCTGATAATCTTCGGCTTCAGACTCTTCAGCAAATGCAGCGCATATTAACC
genomic: TGGCAATGGCTATGGGGAAACTTGGTACCCTAGAAAACTTCCTACGGCAGgtaacttgta ... ttatctgcagGCTGATAATCTGCGGCTTCAGACTCTTCAGCAAATGCAGCGCATATTAACC
EST: gi|88666441|gb|CI718577.1|CI718577
EST:     TGGCAATGGCTATGGGGAAACTTGGTACCCTAGAAAACTTCCTACGGCAG                         GCTGATAATCTGCGGCTTCAGACTCTTCAGCAAATGCAGCGCATATTAACC
genomic: TGGCAATGGCTATGGGGAAACTTGGTACCCTAGAAAACTTCCTACGGCAGgtaacttgta ... ttatctgcagGCTGATAATCTGCGGCTTCAGACTCTTCAGCAAATGCAGCGCATATTAACC
EST: gi|88996380|gb|CI389091.1|CI389091
EST:     TGGCAATGGCTATGGGGAAACTT-GTACCCTAGAAAACTTCCTACGGCAG                         GCTGATAATCTGCGGCTTCAGACTCTTCAGCAAATGCAGCGCATATTAACC
genomic: TGGCAATGGCTATGGGGAAACTTGGTACCCTAGAAAACTTCCTACGGCAGgtaacttgta ... ttatctgcagGCTGATAATCTGCGGCTTCAGACTCTTCAGCAAATGCAGCGCATATTAACC
EST: gi|86864940|gb|CI344516.1|CI344516
EST:     TGGCAATGGCTATGGGGAAACTTGGTACCCTAGAAAACTTCCTACGGCAG                         GCTGATAATCTGCGGCTTCAGACTCTTCAGCAAATGCAGCGCATATTAACC
genomic: TGGCAATGGCTATGGGGAAACTTGGTACCCTAGAAAACTTCCTACGGCAGgtaacttgta ... ttatctgcagGCTGATAATCTGCGGCTTCAGACTCTTCAGCAAATGCAGCGCATATTAACC
EST: gi|88903323|gb|CI088861.1|CI088861
EST:     TGGCAATGGCTATGGGGAAACTTGGTACCCTAGAAAACTTCCTACGGCAG                         GCTGATAATCTGCGGCTTCAGACTCTTCAGCAAATGCAGCGCATATTAACC
genomic: TGGCAATGGCTATGGGGAAACTTGGTACCCTAGAAAACTTCCTACGGCAGgtaacttgta ... ttatctgcagGCTGATAATCTGCGGCTTCAGACTCTTCAGCAAATGCAGCGCATATTAACC
EST: gi|88268526|gb|CI378461.1|CI378461
EST:     TGGCAATGGCTATGGGGAAACTT-GTACCCTAGAAAACTTCCTACGGCAG                         GCTGATAATCTGCGGCTTCAGACTCTTCAGCAAATGCAGCGCATATTAACC
genomic: TGGCAATGGCTATGGGGAAACTTGGTACCCTAGAAAACTTCCTACGGCAGgtaacttgta ... ttatctgcagGCTGATAATCTGCGGCTTCAGACTCTTCAGCAAATGCAGCGCATATTAACC
EST: gi|58688279|gb|CK076966.1|CK076966
EST:     TGGCAATGGCTATGGGGAAACTTGGTACCCTAGAAAACTTCCTACGGCAG                         GCTGATAATCTGCGGCTTCAGACTCTTCAGCAAATGCAGCGCATATTAACC
genomic: TGGCAATGGCTATGGGGAAACTTGGTACCCTAGAAAACTTCCTACGGCAGgtaacttgta ... ttatctgcagGCTGATAATCTGCGGCTTCAGACTCTTCAGCAAATGCAGCGCATATTAACC
EST: gi|88972313|gb|CI717054.1|CI717054
EST:     TGGCAATGGCTATGGGGAAACTTGGTACCCTAGAAAACTTCCTACGGCAG                         GCTGATAATCTGCGGCTTCAGACTCTTCAGCAAATGCAGCGCATATTAACC
genomic: TGGCAATGGCTATGGGGAAACTTGGTACCCTAGAAAACTTCCTACGGCAGgtaacttgta ... ttatctgcagGCTGATAATCTGCGGCTTCAGACTCTTCAGCAAATGCAGCGCATATTAACC
EST: gi|89185780|gb|CI047649.1|CI047649
EST:     TGGCAATGGCTATGGGGAAACTTGGTACCCTAGAAAACTTCCTACGGCAG                         GCTGATAATCTGCGGCTTCAGACTCTTCAGCAAATGCAGCGCATATTAACC
genomic: TGGCAATGGCTATGGGGAAACTTGGTACCCTAGAAAACTTCCTACGGCAGgtaacttgta ... ttatctgcagGCTGATAATCTGCGGCTTCAGACTCTTCAGCAAATGCAGCGCATATTAACC
EST: gi|89163484|gb|CI100374.1|CI100374
EST:     TTGGTACCCTAGGAAACTTCGTACGGCAG                         GCTGATAATCTGCGGCTTCAGACTCTTCAGCAAATGCAGCGCATATTAACC
genomic: TTGGTACCCTAGAAAACTTCCTACGGCAGgtaacttgta ... ttatctgcagGCTGATAATCTGCGGCTTCAGACTCTTCAGCAAATGCAGCGCATATTAACC
EST: gi|88671919|gb|CI725861.1|CI725861
EST:     TGGCAATGGCTATGGGGAAACTTGGTACCCTAGAAAACTTCCTACGGCAG                         GCTGATAATCTGCGGCTTCAGACTCTTCAGCAAATGCAGCGCATATTAACC
genomic: TGGCAATGGCTATGGGGAAACTTGGTACCCTAGAAAACTTCCTACGGCAGgtaacttgta ... ttatctgcagGCTGATAATCTGCGGCTTCAGACTCTTCAGCAAATGCAGCGCATATTAACC
EST: gi|86431709|gb|CI085320.1|CI085320
EST:     TGGCAATGGCTATGGGGAAACTTGGTACCCTAGAAAACTTCCTACGGCAG                         GCTGATAATCTGCGGCTTCAGACTCTTCAGCAAATGCAGCGCATATTAACC
genomic: TGGCAATGGCTATGGGGAAACTTGGTACCCTAGAAAACTTCCTACGGCAGgtaacttgta ... ttatctgcagGCTGATAATCTGCGGCTTCAGACTCTTCAGCAAATGCAGCGCATATTAACC
EST: gi|88668831|gb|CI719788.1|CI719788
EST:     TGGCAATGGCTATGGGGAAACTTGGTACCCTAGAAAACTTCCTACGGCAG                         GCTGATAATCTGCGGCTTCAGACTCTTCAGCAAATGCAGCGCATATTAACC
genomic: TGGCAATGGCTATGGGGAAACTTGGTACCCTAGAAAACTTCCTACGGCAGgtaacttgta ... ttatctgcagGCTGATAATCTGCGGCTTCAGACTCTTCAGCAAATGCAGCGCATATTAACC
EST: gi|88675608|gb|CI729721.1|CI729721
EST:     TGGCAATGGCTATGGGGAAACTTGGTACCCTAGAAAACTTCCTACGGCAG                         GCTGATAATCTGCGGCTTCAGACTCTTCAGCAAATGCAGCGCATATTAACC
genomic: TGGCAATGGCTATGGGGAAACTTGGTACCCTAGAAAACTTCCTACGGCAGgtaacttgta ... ttatctgcagGCTGATAATCTGCGGCTTCAGACTCTTCAGCAAATGCAGCGCATATTAACC
EST: gi|88269659|gb|CI380957.1|CI380957
EST:     TGGCAATGGCTATGGGGAAACTTTGTACCCTAGAAAACTTCCTACGGCAG                         GCTGATAATCTGCGGGTTCAGACTCTTCAGCAAATGCAGCGCATATTAACC
genomic: TGGCAATGGCTATGGGGAAACTTGGTACCCTAGAAAACTTCCTACGGCAGgtaacttgta ... ttatctgcagGCTGATAATCTGCGGCTTCAGACTCTTCAGCAAATGCAGCGCATATTAACC
EST: gi|88561621|gb|CI492338.1|CI492338
EST:     GGGGAAACTTGGTACCCTAGAAAACTTCCTACGGCAG                         GCTGATAATCTGCGGCTTCAGACTCTTCAGCAAATGCAGCGCATATTAACC
genomic: GGGGAAACTTGGTACCCTAGAAAACTTCCTACGGCAGgtaacttgta ... ttatctgcagGCTGATAATCTGCGGCTTCAGACTCTTCAGCAAATGCAGCGCATATTAACC
EST: gi|88996975|gb|CI389641.1|CI389641
EST:     TGGCAATGGCTATGGGGAAACTTGGTACCCTAGAAAACTTCCTACGGCAG                         GCTGATAATCTGCGGCTTCAGACTCTTCAGCAAATGCAGCGCATATTAACC
genomic: TGGCAATGGCTATGGGGAAACTTGGTACCCTAGAAAACTTCCTACGGCAGgtaacttgta ... ttatctgcagGCTGATAATCTGCGGCTTCAGACTCTTCAGCAAATGCAGCGCATATTAACC
EST: gi|88832915|gb|CI369805.1|CI369805
EST:     CCTAGAAAACTTCCTACGGCAG                         GCTGATAATCTGCGGCTTCAGACTCTTCAGCAAATGCAGCGCATATTAACC
genomic: CCTAGAAAACTTCCTACGGCAGgtaacttgta ... ttatctgcagGCTGATAATCTGCGGCTTCAGACTCTTCAGCAAATGCAGCGCATATTAACC
EST: gi|86908723|gb|CI319009.1|CI319009
EST:     TGCCAATGGCTAT-GGGAAACTT-GTACCCTAGAAAACTTCCTACGGCAG                         GCTGATAATCTGCGGCTTCAGACTCTTCAGCAAATGCAGCGCATATTAACC
genomic: TGGCAATGGCTATGGGGAAACTTGGTACCCTAGAAAACTTCCTACGGCAGgtaacttgta ... ttatctgcagGCTGATAATCTGCGGCTTCAGACTCTTCAGCAAATGCAGCGCATATTAACC
EST: gi|86502161|gb|CI144794.1|CI144794
EST:     TGGCAATGGCTATGGGGAAACTTGGTACCCTAGAAAACTTCCTACGGCAG                         GCTGATAATCTGCGGCTTCAGACTCTTCAGCAAATGCAGCGCATATTAACC
genomic: TGGCAATGGCTATGGGGAAACTTGGTACCCTAGAAAACTTCCTACGGCAGgtaacttgta ... ttatctgcagGCTGATAATCTGCGGCTTCAGACTCTTCAGCAAATGCAGCGCATATTAACC
EST: gi|88954627|gb|CI720168.1|CI720168
EST:     TGGCAATGGCTATGGGGAAACTTGGTACCCTAGAAAACTTCCTACGGCAG                         GCTGATAATCTGCGGCTTCAGACTCTTCAGCAAATGCAGCGCATATTAACC
genomic: TGGCAATGGCTATGGGGAAACTTGGTACCCTAGAAAACTTCCTACGGCAGgtaacttgta ... ttatctgcagGCTGATAATCTGCGGCTTCAGACTCTTCAGCAAATGCAGCGCATATTAACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatttctgttgcaaattgtaacttttggtgaactataacgatgccttatctgcagGCTGATAATCTGCGGCTTCAGACTCTTCAGCAAATGCAGCGCATATTAACCACTCGCCAGTCAGCACGAGCTCTACTTGCAATAAGTGACTACTTCTCCC
                                           ccttatct  CT-rich tract
            aaattgtaactttt  TA-rich tract