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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaataaaagcacaaatttaatgctttgtttatgcaattgtggtttcttttatctcatatcacatttctagGTATGTAATGAGTCCTCCTATCCGAGAAGCAGGACATAATAAAGCACTTCAAGTTGCTCTTTCATCAGGAATTTTACAG

Basic information

species Oryza sativa
transcript LOC_Os01g59340.2
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g59340.1 (Oryza sativa), 3'ss of exon 10
lower sequence: GRMZM2G020002_T03 (Zea mays), 3'ss of exon 7
gtaaataaaagcacaaatttaatgctttgtttatgcaattgtggtttcttt-tatctcatatcacatttctagGTATGTAATGAGTCCTCCTATCCGAGAAGCAGGACATAATAAAGCACTTCAAGTTGCTCTTTCATCAGGAATTTTACAG
||||||   |  |||| |     |   || || |  |||| |   || ||| ||| ||| |  |   ||||||||| || ||||||||||| ||||| |||||||| |||  ||||||||| |||| |||||||||||| |||||| |||||
gtaaatgggaaaacaactcagtagtaatgcttttcgaattataaattatttctatttcacacgatgcttctagGTACGTGATGAGTCCTCCAATCCGGGAAGCAGGGCATGGTAAAGCACTCCAAGCTGCTCTTTCATCGGGAATTCTACAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttaatgctttgtttatgcaattgtggtttcttttatctcatatcacatttctagGTATGTAATGAGTCCTCCTATCCGAGAAGCAGGACATAATAAAGCACTTCAAGTTGCTCTTTCATCAGGAATTTTACAG
 atttaat  putative branch site (score: 4)
                                              catttct  putative PPT
                           tttcttttat  TA-rich tract