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...gggactctgggagttcgtgatgctttgcttaatttatttgattggcatgtctcatacaattgattgagtcatcaacattgttcacactttctttcgacagATATTTTACTTCATTGGATTTGGACTGTTCTGCCTTGAATCACTACTCAGCGTTGTTGTCATCCAG
species | Oryza sativa |
transcript | LOC_Os01g57220.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TGATGTCATAGGAAACAATGCTATTGTGGGG ATATTCTACTTCATTGGATTTGGACTGTTCTGCCTTGAATCACTACTCAGCEST: gi|11370676|gb|AU164981.1|AU164981
genomic: TGATGTCATAGGAAACAATGCTATTGTGGGGgtaagtctca ... ctttcgacagATATTTTACTTCATTGGATTTGGACTGTTCTGCCTTGAATCACTACTCAGC
EST: TGGGATTTTGCCGGCTATTGATGTCATAGGAAACAATGCTATTGTGGGG GEST: gi|11370676|gb|AU164981.1|AU164981
genomic: TGGGATTTTGCCGGCTATTGATGTCATAGGAAACAATGCTATTGTGGGGgtaagtctca ... ctttcgacag-
EST: TGGGATTTTGCCGGCTATTGATGTCATAGGAAACAATGCTATTGTGGGG GEST: gi|87035348|gb|CI189970.1|CI189970
genomic: TGGGATTTTGCCGGCTATTGATGTCATAGGAAACAATGCTATTGTGGGGgtaagtctca ... ctttcgacag-
EST: TGGGATTTTGCCGGCTATTGATGTCATAGGAAACAATGCTATTGTGGGG ATATTTTACTTCATTGGATTTGGACTGTTCTGCCTTGAATCACTACTCAGCEST: gi|89180045|gb|CI044324.1|CI044324
genomic: TGGGATTTTGCCGGCTATTGATGTCATAGGAAACAATGCTATTGTGGGGgtaagtctca ... ctttcgacagATATTTTACTTCATTGGATTTGGACTGTTCTGCCTTGAATCACTACTCAGC
EST: TGGGATTTTGCCGGCTATTGATGTCATAGGAAACAATGCTATTGTGGGG ATATTTTACTTCATTGGATTTGGACTGTTCTGCCTTGAATCACTACTCAGCEST: gi|55412661|gb|CV725037.1|CV725037
genomic: TGGGATTTTGCCGGCTATTGATGTCATAGGAAACAATGCTATTGTGGGGgtaagtctca ... ctttcgacagATATTTTACTTCATTGGATTTGGACTGTTCTGCCTTGAATCACTACTCAGC
EST: TGGGATTTTGCCGGCTATTGATGTCATAGGAAACAATGCTATTGTGGGG ATATTTTACTTCATTGGATTTGGACTGTTTTGCCTTGAATCACTACTCAGCEST: gi|88988413|gb|CI037656.1|CI037656
genomic: TGGGATTTTGCCGGCTATTGATGTCATAGGAAACAATGCTATTGTGGGGgtaagtctca ... ctttcgacagATATTTTACTTCATTGGATTTGGACTGTTCTGCCTTGAATCACTACTCAGC
EST: TATTGATGTCATAGGAAACAATGCTATTGTGGGG ATATTTTACTTCATTGGATTTGGACTGTTCTGCCTTGAATCACTACTCAGCEST: gi|86889655|gb|CI299853.1|CI299853
genomic: TATTGATGTCATAGGAAACAATGCTATTGTGGGGgtaagtctca ... ctttcgacagATATTTTACTTCATTGGATTTGGACTGTTCTGCCTTGAATCACTACTCAGC
EST: TGGGATTTTGCCGGCTATTGATGTCATAGGAAACAATGCTATTGTGGGG ATATTTTACTTCATTGGATTTGGACTGTTCTGCCTTGAATCACTACTCAGCEST: gi|3760903|gb|C98157.1|C98157
genomic: TGGGATTTTGCCGGCTATTGATGTCATAGGAAACAATGCTATTGTGGGGgtaagtctca ... ctttcgacagATATTTTACTTCATTGGATTTGGACTGTTCTGCCTTGAATCACTACTCAGC
EST: TGGGATTTTGCCGGCTATTGATGTCATAGGAAACAATGCTATTGTGGGG ATATTTTACTTCATTGGATTTGGACTGTTCTGCCTTGAATCACTACTCAGCEST: gi|33683758|gb|CF311997.1|CF311997
genomic: TGGGATTTTGCCGGCTATTGATGTCATAGGAAACAATGCTATTGTGGGGgtaagtctca ... ctttcgacagATATTTTACTTCATTGGATTTGGACTGTTCTGCCTTGAATCACTACTCAGC
EST: TGGGATTTTGCCGGCTATTGATGTCATAGGAAACAATGCTATTGTGGGG ATATTTTACTTCATTGGATTTGGACTGTTCTGCCTTGAATCACTACTCAGC
genomic: TGGGATTTTGCCGGCTATTGATGTCATAGGAAACAATGCTATTGTGGGGgtaagtctca ... ctttcgacagATATTTTACTTCATTGGATTTGGACTGTTCTGCCTTGAATCACTACTCAGC
catgtctcatacaattgattgagtcatcaacattgttcacactttctttcgacagATATTTTACTTCATTGGATTTGGACTGTTCTGCCTTGAATCACTACTCAGCGTTGTTGTCATCCAG
aattgat putative branch site (score: 47)
ttcacactttctttc putative PPT
atacaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gggactctgggagttcgtgatgctttgcttaatttatttgattggcatgtctcatacaattgattgagtcatcaacattgttcacactttctttcgacagATATTTTACTTCATTGGATTTGGACTGTTCTGCCTTGAATCACTACTCAGCGTTGTTGTCATCCAG
- - - - - - - - -tgatgct
- - - - - - - - - - - - -tgcttaa
- - - - - - - - - - - - - - - - - - -ttgattg
- - - - - - - - - - - - - - - - - - - - - -ggcatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - catacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atcaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcacac