1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gttagttttggttcttttctcagtgatgctatttttttttctgatgaaattataccactgaactgaaaaaaaattcatgctattgttacacatttttatgtgataccttttctcttgggttgcagAATTGCCCGAGGTTGGTCCTCTCAAACCTGAAGACATCGAAGTTGCTTTGAGGAACACAAGGCCGTCTGCGCATCTCCATGCACATCGCTATGAGAAGTT
species | Oryza sativa |
transcript | LOC_Os01g55260.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ACGTCTTATGTCAGTTCTTGAAGCCAGAGATGAGCTGGTGCCTGAGGAAG AATTGCCCGAGGTTGGTCCTCTCAAACCTGAAGACATCGAAGTTGCTTTGAEST: gi|86501179|gb|CI143812.1|CI143812
genomic: ACGTCTTATGTCAGTTCTTGAAGCCAGAGATGAGCTGGTGCCTGAGGAAGgttagttttg ... tgggttgcagAATTGCCCGAGGTTGGTCCTCTCAAACCTGAAGACATCGAAGTTGCTTTGA
EST: ACGTCTTATGTCAGTTCTTGAAGCCAGAGATGAGCTGGTGCCTGAGGAAG AATTGCCCGAGGTTGGTCCTCTCAAACCTGAAGACATCGAAGTTGCTTTGAEST: gi|88847654|gb|CI018345.1|CI018345
genomic: ACGTCTTATGTCAGTTCTTGAAGCCAGAGATGAGCTGGTGCCTGAGGAAGgttagttttg ... tgggttgcagAATTGCCCGAGGTTGGTCCTCTCAAACCTGAAGACATCGAAGTTGCTTTGA
EST: ACGTCTTATGTCAGTTCTTGAAGCCAGAGATGAGCTGGTGCCTGAGGAAG AATTGCCCGAGGTTGGTCCTCTCAAACCTGAAGACATCGAAGTTGCTTTGAEST: gi|88506861|gb|CI434367.1|CI434367
genomic: ACGTCTTATGTCAGTTCTTGAAGCCAGAGATGAGCTGGTGCCTGAGGAAGgttagttttg ... tgggttgcagAATTGCCCGAGGTTGGTCCTCTCAAACCTGAAGACATCGAAGTTGCTTTGA
EST: ACGTCTTATGTCAGTTCTTGAAGCCAGAGATGAGCTGGTGCCTGAGGAAG AATTGCCCGAGGTTGGTCCTCTCAAACCTGAAGACATCGAAGTTGCTTTGAEST: gi|86432582|gb|CI086193.1|CI086193
genomic: ACGTCTTATGTCAGTTCTTGAAGCCAGAGATGAGCTGGTGCCTGAGGAAGgttagttttg ... tgggttgcagAATTGCCCGAGGTTGGTCCTCTCAAACCTGAAGACATCGAAGTTGCTTTGA
EST: ACGTCTTATGTCAGTTCTTGAAGCCAGAGATGAGCTGGTGCCTGAGGAAG AATTGCCCGAGGTTGGTCCTCTCAAACCTGAAGACATCGAAGTTGCTTTGAEST: gi|87016598|gb|CI275600.1|CI275600
genomic: ACGTCTTATGTCAGTTCTTGAAGCCAGAGATGAGCTGGTGCCTGAGGAAGgttagttttg ... tgggttgcagAATTGCCCGAGGTTGGTCCTCTCAAACCTGAAGACATCGAAGTTGCTTTGA
EST: ACGTCTTATGTCAGTTCTTGAAGCCAGAGATGAGCTGGTGCCTGAGGAAG AATTGCCCGAGGTTGGTCCTCTCAAACCTGAAGACATCGAAGTTGCTTTGAEST: gi|3768081|gb|AU032108.1|AU032108
genomic: ACGTCTTATGTCAGTTCTTGAAGCCAGAGATGAGCTGGTGCCTGAGGAAGgttagttttg ... tgggttgcagAATTGCCCGAGGTTGGTCCTCTCAAACCTGAAGACATCGAAGTTGCTTTGA
EST: TCTTAATGTCAGTTCTTGAAGCCAGAGATGAAGCTGGTGCCTNAGGGAAG AATTGCCCGANGTTGGTCCTCTCAAACTTGAAGAEST: gi|88959878|gb|CI381756.1|CI381756
genomic: TCTTA-TGTCAGTTCTTGAAGCCAGAGATGA-GCTGGTGCCTGAGG-AAGgttagttttg ... tgggttgcagAATTGCCCGAGGTTGGTCCTCTCAAACCTGAAGA
EST: ACGTCTTATGTCAGTTCTTGAAGCCAGAGATGAGCTGGTGCCTGAGGAAG AATTGCCCGAGGTTGTTCCTCTCAAACCTGAAGACATCGAAGTTGCTTTGAEST: gi|88283778|gb|CI405224.1|CI405224
genomic: ACGTCTTATGTCAGTTCTTGAAGCCAGAGATGAGCTGGTGCCTGAGGAAGgttagttttg ... tgggttgcagAATTGCCCGAGGTTGGTCCTCTCAAACCTGAAGACATCGAAGTTGCTTTGA
EST: ACGTCTTATGTCAGTTCTTGAAGCCAGAGATGAGCTGGTGCCTGAGGAAG AATTGCCCGAGGTTGGTCCTCTCAAACCTGAAGACATCGAAGTTGCTTTGAEST: gi|88969625|gb|CI383128.1|CI383128
genomic: ACGTCTTATGTCAGTTCTTGAAGCCAGAGATGAGCTGGTGCCTGAGGAAGgttagttttg ... tgggttgcagAATTGCCCGAGGTTGGTCCTCTCAAACCTGAAGACATCGAAGTTGCTTTGA
EST: ACGTCTTATGTCAGTTCTTGAAGCCAGAGATGAGCTGGTGCCTGAGGAAG AATTGCCCGAGGTTGGTCCTCTCAAACCTGAAGACATCGAAGTTGCTTTGAEST: gi|86493620|gb|CI136253.1|CI136253
genomic: ACGTCTTATGTCAGTTCTTGAAGCCAGAGATGAGCTGGTGCCTGAGGAAGgttagttttg ... tgggttgcagAATTGCCCGAGGTTGGTCCTCTCAAACCTGAAGACATCGAAGTTGCTTTGA
EST: ACGTCTTATGTCAGTTCTTGAAGCCAGAGATGAGCTGGTGCCTGAGGAAG AATTGCCCGAGGTTGGTCCTCTCAAACCTGAAGACATCGAAGTTGCTTTGAEST: gi|87036076|gb|CI189523.1|CI189523
genomic: ACGTCTTATGTCAGTTCTTGAAGCCAGAGATGAGCTGGTGCCTGAGGAAGgttagttttg ... tgggttgcagAATTGCCCGAGGTTGGTCCTCTCAAACCTGAAGACATCGAAGTTGCTTTGA
EST: ACGTCTTATGTCAGTTCTTGAAGCCAGAGATGAGCTGGTGCCTGAGGAAG AATTGCCCGAGGTTGGTCCTCTCAAACCTGAAGACATCGAAGTTGCTTTGAEST: gi|86499978|gb|CI142611.1|CI142611
genomic: ACGTCTTATGTCAGTTCTTGAAGCCAGAGATGAGCTGGTGCCTGAGGAAGgttagttttg ... tgggttgcagAATTGCCCGAGGTTGGTCCTCTCAAACCTGAAGACATCGAAGTTGCTTTGA
EST: ACGTCTTATGTCAGTTCTTGAAGCCAGAGATGAGCTGGTGCCTGAGGAAG AATTGCCCGAGGTTGGTCCTCTCAAACCTGAAGACATCGAAGTTGCTTTGAEST: gi|88990587|gb|CI107974.1|CI107974
genomic: ACGTCTTATGTCAGTTCTTGAAGCCAGAGATGAGCTGGTGCCTGAGGAAGgttagttttg ... tgggttgcagAATTGCCCGAGGTTGGTCCTCTCAAACCTGAAGACATCGAAGTTGCTTTGA
EST: ACGTCTTATGTCAGTTCTTGAAGCCAGAGATGAGCTGGTGCCTGAGGAAG AATTGCCCGAGGTTGGTCCTCTCAAACCTGAAGACATCGAAGTTGCTTTGAEST: gi|8858208|gb|AU095526.1|AU095526
genomic: ACGTCTTATGTCAGTTCTTGAAGCCAGAGATGAGCTGGTGCCTGAGGAAGgttagttttg ... tgggttgcagAATTGCCCGAGGTTGGTCCTCTCAAACCTGAAGACATCGAAGTTGCTTTGA
EST: ACGTCTTATGTCAGTTCTTGAAGCCAGAGATGAGCTGGTGCCTGAGGAAG AATTGCCCGAGGTTGGTCCTCTCAAACCTGAAGACATCGAAGTTGCTTTGAEST: gi|88227280|gb|CI228393.1|CI228393
genomic: ACGTCTTATGTCAGTTCTTGAAGCCAGAGATGAGCTGGTGCCTGAGGAAGgttagttttg ... tgggttgcagAATTGCCCGAGGTTGGTCCTCTCAAACCTGAAGACATCGAAGTTGCTTTGA
EST: ACGTCTTATGTCAGTTCTTGAAGCCAGAGATGAGCTGGTGCCTGAGGAAG AATTGCCCGAGGTTGGTCCTCTCAAACCTGAAGACATCGAAGTTGCTTTGAEST: gi|88366261|gb|CI551093.1|CI551093
genomic: ACGTCTTATGTCAGTTCTTGAAGCCAGAGATGAGCTGGTGCCTGAGGAAGgttagttttg ... tgggttgcagAATTGCCCGAGGTTGGTCCTCTCAAACCTGAAGACATCGAAGTTGCTTTGA
EST: ACGTCTTATGTCAGTTCTTGAAGCCAGAGATGAGCTGGTGCCTGAGGAAG AATTGCCCGAGGTTGGTCCTCTCAAACCTGAAGACATCGAAGTTGCTTTGAEST: gi|88984340|gb|CI020238.1|CI020238
genomic: ACGTCTTATGTCAGTTCTTGAAGCCAGAGATGAGCTGGTGCCTGAGGAAGgttagttttg ... tgggttgcagAATTGCCCGAGGTTGGTCCTCTCAAACCTGAAGACATCGAAGTTGCTTTGA
EST: ACGTCTTATGTCAGTTCTTGAAGCCAGAGATGAGCTGGTGCCTGAGGAAG AATTGCCCGAGGTTGGTCCTCTCAAACCTGAAGACATCGAAGTTGCTTTGA
genomic: ACGTCTTATGTCAGTTCTTGAAGCCAGAGATGAGCTGGTGCCTGAGGAAGgttagttttg ... tgggttgcagAATTGCCCGAGGTTGGTCCTCTCAAACCTGAAGACATCGAAGTTGCTTTGA
aaattcatgctattgttacacatttttatgtgataccttttctcttgggttgcagAATTGCCCGAGGTTGGTCCTCTCAAACCTGAAGACATCGAAGTTGCTTTGAGGAACACAAGGCCGTCTGCGCATCTCCATGCACATCGCTATGAGAAGTT
taccttttctctt CT-rich tract
ttacacatttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagttttggttcttttctcagtgatgctatttttttttctgatgaaattataccactgaactgaaaaaaaattcatgctattgttacacatttttatgtgataccttttctcttgggttgcagAATTGCCCGAGGTTGGTCCTCTCAAACCTGAAGACATCGAAGTTGCTTTGAGGAACACAAGGCCGTCTGCGCATCTCCATGCACATCGCTATGAGAAGTT
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