1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtagcggctaatgtctttcctgctgtattgcaatggtcttctgaacattctgtcatagtaatagagaaattgttcaagtaacagattgatttactttggctgtgcccttgtcttgaacagGTGAAACCTCTCAAATGCTTCCTGAGCTTTGAGGGCATGTGGAAGAAAGATCGAAATGAGGGCAGCACCACTCGTTCATCACGTTCATCGAGATCCTATT
species | Oryza sativa |
transcript | LOC_Os01g54480.3 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AACAATTGTCTTATATCCAGAATGAAATATCTCAGAGAAACCGTTGGAAG GTGAAACCTCTCAAATGCTTCCTGAGCTTTGAGGGCATGTGGAAGAAAGATEST: gi|86414873|gb|CI069276.1|CI069276
genomic: AACAATTGTCTTATATCCAGAATGAAATATCTCAGAGAAACCGTTGGAAGgtagcggcta ... tcttgaacagGTGAAACCTCTCAAATGCTTCCTGAGCTTTGAGGGCATGTGGAAGAAAGAT
EST: AACAATTGTCTTATATCCAGAATGAAATATCTCAGAGAAACCGTTGGAAG GTGAAACCTCTCAAATGCTTCCTGAGCTTTGAGGGCATGTGGAAGAAAGATEST: gi|88243573|gb|CI243970.1|CI243970
genomic: AACAATTGTCTTATATCCAGAATGAAATATCTCAGAGAAACCGTTGGAAGgtagcggcta ... tcttgaacagGTGAAACCTCTCAAATGCTTCCTGAGCTTTGAGGGCATGTGGAAGAAAGAT
EST: ATCCAGAATGAAATATCTCAGAGAAACCTTTGGAAG GTGAAACCTCTCAAATGCTTCCTGAGCTTTGAGGGCATGTGGAAGAAAGATEST: gi|38481304|gb|CF965393.1|CF965393
genomic: ATCCAGAATGAAATATCTCAGAGAAACCGTTGGAAGgtagcggcta ... tcttgaacagGTGAAACCTCTCAAATGCTTCCTGAGCTTTGAGGGCATGTGGAAGAAAGAT
EST: CTTATATCCAGAATGAAATATCTCAGAGAAACCGTTGGAAG GTGAAACCTCTCAAATGCTTCCTGAGCTTTGAGGGCATGTGGAAGAAAGATEST: gi|88284797|gb|CI406243.1|CI406243
genomic: CTTATATCCAGAATGAAATATCTCAGAGAAACCGTTGGAAGgtagcggcta ... tcttgaacagGTGAAACCTCTCAAATGCTTCCTGAGCTTTGAGGGCATGTGGAAGAAAGAT
EST: AACAATTGTCTTATATCCAGAATGANATATCTCAGAGAAACCGTTGGAAG ATGAAACCTCTCAAATGCTTCCTGAGCTTTGAGGGCATGTGGAAGAAAGAT
genomic: AACAATTGTCTTATATCCAGAATGAAATATCTCAGAGAAACCGTTGGAAGgtagcggcta ... tcttgaacagGTGAAACCTCTCAAATGCTTCCTGAGCTTTGAGGGCATGTGGAAGAAAGAT
gaaattgttcaagtaacagattgatttactttggctgtgcccttgtcttgaacagGTGAAACCTCTCAAATGCTTCCTGAGCTTTGAGGGCATGTGGAAGAAAGATCGAAATGAGGGCAGCACCACTCGTTCATCACGTTCATCGAGATCCTATT
cccttgtctt CT-rich tract
attgattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagcggctaatgtctttcctgctgtattgcaatggtcttctgaacattctgtcatagtaatagagaaattgttcaagtaacagattgatttactttggctgtgcccttgtcttgaacagGTGAAACCTCTCAAATGCTTCCTGAGCTTTGAGGGCATGTGGAAGAAAGATCGAAATGAGGGCAGCACCACTCGTTCATCACGTTCATCGAGATCCTATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC