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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcattccttcttttgttttgcctgtggtaactactaaattgtttggagcactattatgacatattttccattgcaatcttcttgcgtacaagcttccgcaatctgtgttccatttgcctatctggaactttgaacttttatgtgccactatttcaccctgaactgaccacttttctgctccacactatgatagGCTGATTGAACAATGCTGGAGTGAAAATCCTGCTAGCAGGCCTGACTTTAGAACGATCATTGAACAATTGTCTTATATCCAGAATGAAATATCTCAGAGA

Basic information

species Oryza sativa
transcript LOC_Os01g54480.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86260621|gb|CI066494.1|CI066494
EST:     AGGCCACCTTTCAGAGCTCCTCCAAAGCATTATGCTTACGGATTGAGAGA                         GCTGATTGAACAATGCTGGAGTGAAAATCCTGCTAGCAGGCCTGACTTTAG
genomic: AGGCCACCTTTCAGAGCTCCTCCAAAGCATTATGCTTACGGATTGAGAGAgtaagcattc ... actatgatagGCTGATTGAACAATGCTGGAGTGAAAATCCTGCTAGCAGGCCTGACTTTAG
EST: gi|88245429|gb|CI245278.1|CI245278
EST:     AGGCCACCTTTCAGAGCTCCTCCAAAGCATTATGCTTACGGATTGAGAGA                         GCTGATTGAACAATGCTGGAGTGAAAATCCTGCTAGCAGGCCTGACTTTAG
genomic: AGGCCACCTTTCAGAGCTCCTCCAAAGCATTATGCTTACGGATTGAGAGAgtaagcattc ... actatgatagGCTGATTGAACAATGCTGGAGTGAAAATCCTGCTAGCAGGCCTGACTTTAG
EST: gi|89162896|gb|CI099786.1|CI099786
EST:     ATTATGCTTACGGATTGAGAGA                         GCTGATTGAACAATGCTGGAGTGAAAATCCTGCTAGCAGGCCTGACTTTAG
genomic: ATTATGCTTACGGATTGAGAGAgtaagcattc ... actatgatagGCTGATTGAACAATGCTGGAGTGAAAATCCTGCTAGCAGGCCTGACTTTAG
EST: gi|86495208|gb|CI137841.1|CI137841
EST:     AGGCCACCTTTCAGAGCTCCTCCAAAGCATTATGCTTACGGATTGAGAGA                         GCTGATTGAACAATGCTGGAGTGAAAATCCTGCTAGCAGGCCTGACTTTAG
genomic: AGGCCACCTTTCAGAGCTCCTCCAAAGCATTATGCTTACGGATTGAGAGAgtaagcattc ... actatgatagGCTGATTGAACAATGCTGGAGTGAAAATCCTGCTAGCAGGCCTGACTTTAG
EST: gi|88284797|gb|CI406243.1|CI406243
EST:     AAGCATTATGCTTACGGATTGAGAGA                         GCTGATTGAACAATGCTGGAGTGAAAATCCTGCTAGCAGGCCTGACTTTAG
genomic: AAGCATTATGCTTACGGATTGAGAGAgtaagcattc ... actatgatagGCTGATTGAACAATGCTGGAGTGAAAATCCTGCTAGCAGGCCTGACTTTAG
EST: gi|86485898|gb|CI128531.1|CI128531
EST:     AGGCCACCTTTCAGAGCTCCTCCAAAGCATTATGCTTACGGATTGAGAGA                         GCTGATTGAACAATGCTGGAGTGAAAATCCTGCTAGCAGGCCTGACTTTAG
genomic: AGGCCACCTTTCAGAGCTCCTCCAAAGCATTATGCTTACGGATTGAGAGAgtaagcattc ... actatgatagGCTGATTGAACAATGCTGGAGTGAAAATCCTGCTAGCAGGCCTGACTTTAG
EST: gi|86498118|gb|CI140751.1|CI140751
EST:     AGGCCACCTTTCAGAGCTCCTCCAAAGCATTATGCTTACGGATTGAGAGA                         GCTGATTGAACAATGCTGGAGTGAAAATCCTGCTAGCAGGCCTGACTTTAG
genomic: AGGCCACCTTTCAGAGCTCCTCCAAAGCATTATGCTTACGGATTGAGAGAgtaagcattc ... actatgatagGCTGATTGAACAATGCTGGAGTGAAAATCCTGCTAGCAGGCCTGACTTTAG
EST: gi|86259845|gb|CI065718.1|CI065718
EST:     AGGCCACCTTTCAGAGCTCCTCCAAAGCATTATGCTTACGGATTGAGAGA                         GCTGATTGAACAATGCTGGAGTGAAAATCCTGCTAGCAGGCCTGACTTTAG
genomic: AGGCCACCTTTCAGAGCTCCTCCAAAGCATTATGCTTACGGATTGAGAGAgtaagcattc ... actatgatagGCTGATTGAACAATGCTGGAGTGAAAATCCTGCTAGCAGGCCTGACTTTAG
EST: gi|88222953|gb|CI222802.1|CI222802
EST:     AGGCCACCTTTCAGAGCTCCTCCAAAGCATTATGCTTACGGATTGAGAGA                         GCTGATTGAACAATGCTGGAGTGAAAATCCTGCTAGCAGGCCTGACTTTAG
genomic: AGGCCACCTTTCAGAGCTCCTCCAAAGCATTATGCTTACGGATTGAGAGAgtaagcattc ... actatgatagGCTGATTGAACAATGCTGGAGTGAAAATCCTGCTAGCAGGCCTGACTTTAG
EST: gi|89166396|gb|CI103486.1|CI103486
EST:     AGGCCACCTTTCAGAGCTCCTCCAAAGCATTATGCTTACGGATTGAGAGA                         GCTGATTGAACAATGCTGGAGTGAAAATCCTGCTAGCAGGCCTGACTTTAG
genomic: AGGCCACCTTTCAGAGCTCCTCCAAAGCATTATGCTTACGGATTGAGAGAgtaagcattc ... actatgatagGCTGATTGAACAATGCTGGAGTGAAAATCCTGCTAGCAGGCCTGACTTTAG
EST: gi|88975291|gb|CI023542.1|CI023542
EST:     AGGCCACCTTTCAGAGCTCCTCCAAAGCATTATGCTTACGGATTGAGAGA                         GCTGATTGAACAATGCTGGAGTGAAAATCCTGCTAGCAGGCCTGACTTTAG
genomic: AGGCCACCTTTCAGAGCTCCTCCAAAGCATTATGCTTACGGATTGAGAGAgtaagcattc ... actatgatagGCTGATTGAACAATGCTGGAGTGAAAATCCTGCTAGCAGGCCTGACTTTAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgtgccactatttcaccctgaactgaccacttttctgctccacactatgatagGCTGATTGAACAATGCTGGAGTGAAAATCCTGCTAGCAGGCCTGACTTTAGAACGATCATTGAACAATTGTCTTATATCCAGAATGAAATATCTCAGAGA
                      aactgac  putative branch site (score: 2)
        actattt  TA-rich tract