1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...cgctctaaacaatgatgtggcattcttaattttcttcctccttaatcaatctttatgttggtaaatatgatcataaatgcatctttttatatttctgcagTCCAAATTGCCGGGAAATACTTCCACATCTGGTGCCCCTCCCAGAGTAGAGGACATCCCTGTTGTTGACAAGGCTGTGGACACATGCGCCGGTCCATCAA
species | Oryza sativa |
transcript | LOC_Os01g50616.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TAGCTTCAGTTAACCCCATCATAAACCCTCATTTGACACCCGTTGACGAG TCCAAATTGCCGGGAAATACTTCCACATCTGGTGCCCCTCCCAGAGTAGAGEST: gi|218481352|gb|FG969345.1|FG969345
genomic: TAGCTTCAGTTAACCCCATCATAAACCCTCATTTGACACCCGTTGACGAGgcaagatctt ... atttctgcagTCCAAATTGCCGGGAAATACTTCCACATCTGGTGCCCCTCCCAGAGTAGAG
EST: TAGCTTCAGTTAACCCCATCATAAACTCTCATTTGACACCCGTTGACGAG TCCAAATTGCCGGGAAATACTTCCACATCTGGTGCCCCTCCCAGAGTAGAGEST: gi|29663640|gb|CB659915.1|CB659915
genomic: TAGCTTCAGTTAACCCCATCATAAACCCTCATTTGACACCCGTTGACGAGgcaagatctt ... atttctgcagTCCAAATTGCCGGGAAATACTTCCACATCTGGTGCCCCTCCCAGAGTAGAG
EST: TAGCTTCAGTTAACCCCATCATAAACCCTCATTTGACACCCGTTGACGAG TCCAAATTGCCGGGAAATACTTCCACATCTGGTGCCCCTCCCAGAGTAGAG
genomic: TAGCTTCAGTTAACCCCATCATAAACCCTCATTTGACACCCGTTGACGAGgcaagatctt ... atttctgcagTCCAAATTGCCGGGAAATACTTCCACATCTGGTGCCCCTCCCAGAGTAGAG
tcaatctttatgttggtaaatatgatcataaatgcatctttttatatttctgcagTCCAAATTGCCGGGAAATACTTCCACATCTGGTGCCCCTCCCAGAGTAGAGGACATCCCTGTTGTTGACAAGGCTGTGGACACATGCGCCGGTCCATCAA
tctttttatatttct CT-rich tract
ataaatgcatcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgctctaaacaatgatgtggcattcttaattttcttcctccttaatcaatctttatgttggtaaatatgatcataaatgcatctttttatatttctgcagTCCAAATTGCCGGGAAATACTTCCACATCTGGTGCCCCTCCCAGAGTAGAGGACATCCCTGTTGTTGACAAGGCTGTGGACACATGCGCCGGTCCATCAA
- - - - - -atgatgt
- - - - - - - - - ggcattc
- - - - - - - - - - - - - - - - - - - - - - - - - - -tatgttg