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gtaagtgtcacccatttgtgatagttcggtccacttcctatgtcttctgataattcgtattcttagGTCAAAATATGCACACCTGCAAGACTTTGGATCAGAAATTCTCCCGAGAGCTGTTTTAGAGCATAATGTGAAG
species | Oryza sativa |
transcript | LOC_Os01g44220.3 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TCAATGGGAATTTATGTCTTGAAAAAGGATGTTCTTTTAGACATTCTGAA GTCAAAATATGCACACCTGCAAGACTTTGAATCAGAAATTCTCCCGAGAGCEST: gi|88461656|gb|CI695498.1|CI695498
genomic: TCAATGGGAATTTATGTCTTGAAAAAGGATGTTCTTTTAGACATTCTGAAgtaagtgtca ... gtattcttagGTCAAAATATGCACACCTGCAAGACTTTGGATCAGAAATTCTCCCGAGAGC
EST: TCAATGGGAATTTATGTCTTGAAAAAGGATGTTCTTTTAGACATTCTGAA GTCAAAATATGCACACCTGCAAGACTTTGGATCAGAAATTCTCCCGAGAGCEST: gi|2797455|gb|AA750749.1|AA750749
genomic: TCAATGGGAATTTATGTCTTGAAAAAGGATGTTCTTTTAGACATTCTGAAgtaagtgtca ... gtattcttagGTCAAAATATGCACACCTGCAAGACTTTGGATCAGAAATTCTCCCGAGAGC
EST: CTTGAAAAAGGATGTTCTTTTAGACATTCTGAA GTCAAAATATGCACACCTGCAAGACTTTGGATCAGAAATTCTCCCGAGAGCEST: gi|116875001|gb|EC365509.1|EC365509
genomic: CTTGAAAAAGGATGTTCTTTTAGACATTCTGAAgtaagtgtca ... gtattcttagGTCAAAATATGCACACCTGCAAGACTTTGGATCAGAAATTCTCCCGAGAGC
EST: TCAATGGGAATTTATGTCTTGAAAAAGGATGTTCTTTTAGACATTCTGGA GTCAAAATATGCACACCTGCAAGACTTTGGATCAGAAATTCTCCCGAGAGCEST: gi|66915625|gb|CX102473.1|CX102473
genomic: TCAATGGGAATTTATGTCTTGAAAAAGGATGTTCTTTTAGACATTCTGAAgtaagtgtca ... gtattcttagGTCAAAATATGCACACCTGCAAGACTTTGGATCAGAAATTCTCCCGAGAGC
EST: TCAATGGGAATTTATGTCTTGAAAAAGGATGTTCTTTTAGACATTCTGAA GTCAAAATATGCACACCTGCAAGACTTTGGATCAGAAATTCTCCCGAGAGCEST: gi|116875027|gb|EC365535.1|EC365535
genomic: TCAATGGGAATTTATGTCTTGAAAAAGGATGTTCTTTTAGACATTCTGAAgtaagtgtca ... gtattcttagGTCAAAATATGCACACCTGCAAGACTTTGGATCAGAAATTCTCCCGAGAGC
EST: TCAATGGGAATTTATGTCTTGAAAAAGGATGTTCTTTTAGACATTCTGAA GTCAAAATATGCACACCTGCAAGACTTTGGATCAGAAATTCTCCCGAGAGCEST: gi|1631864|gb|C19593.1|C19593
genomic: TCAATGGGAATTTATGTCTTGAAAAAGGATGTTCTTTTAGACATTCTGAAgtaagtgtca ... gtattcttagGTCAAAATATGCACACCTGCAAGACTTTGGATCAGAAATTCTCCCGAGAGC
EST: TCAATGGGAATTTATGTCTTGAAAAAGGATGTTCTTTTAGACATTCTGAA GTCAAAATATGCACACCTGCAAGACTTTGGATCAGAAATTCTCCCGAGAGC
genomic: TCAATGGGAATTTATGTCTTGAAAAAGGATGTTCTTTTAGACATTCTGAAgtaagtgtca ... gtattcttagGTCAAAATATGCACACCTGCAAGACTTTGGATCAGAAATTCTCCCGAGAGC
ccatttgtgatagttcggtccacttcctatgtcttctgataattcgtattcttagGTCAAAATATGCACACCTGCAAGACTTTGGATCAGAAATTCTCCCGAGAGCTGTTTTAGAGCATAATGTGAAG
ttctgat putative branch site (score: 3)
tattctt putative PPT
tgataatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgtcacccatttgtgatagttcggtccacttcctatgtcttctgataattcgtattcttagGTCAAAATATGCACACCTGCAAGACTTTGGATCAGAAATTCTCCCGAGAGCTGTTTTAGAGCATAATGTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA