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gtaagttatgttaccattattaaactcataatttctattttatatcgagtagctcattgctgattctgacaggatagttttttatgtgtacattatttttatactatgcttgcataaaacctcagaatttgtatgagaaggcccatgtaattattcttgtattctttcctgcagGGTTTGAAGTCAGAACTTGAGAAGGCTTCACCTTCACTGGGTCGCACTGCTCTTTATACAAGAGAGTCAAGAATAAATGAGTTGCCTAG
species | Oryza sativa |
transcript | LOC_Os01g36930.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AGTGTCATATATCTCATGATGTAAACCACCTTCATGAAGGACTTAAGCAT GGTTTGAAGTCAGAACTTGAGAAGGCTTCACCTTCACTGGGTCGCACTGCTEST: gi|29615418|gb|CB620430.1|CB620430
genomic: AGTGTCATATATCTCATGATGTAAACCACCTTCATGAAGGACTTAAGCATgtaagttatg ... tttcctgcagGGTTTGAAGTCAGAACTTGAGAAGGCTTCACCTTCACTGGGTCGCACTGCT
EST: AGTGTCATATATCTCATGATGTAAACCACCTTCATGAAGGACTTAAGCAT GGTTTGAAGTCAGAACTTGAGAAAGCTTCACCTTCACTGGGTCGCACTGCTEST: gi|58601182|gb|CK011710.1|CK011710
genomic: AGTGTCATATATCTCATGATGTAAACCACCTTCATGAAGGACTTAAGCATgtaagttatg ... tttcctgcagGGTTTGAAGTCAGAACTTGAGAAGGCTTCACCTTCACTGGGTCGCACTGCT
EST: AGTGTCATATATCTCATGATGTAAACCACCTTCATGAAGGACTTAAGCAT GGTTTGAAGTCA-A-CTTGAGAAGGCTTCACCTTCACTGGGTCGCACTGCTEST: gi|218489926|gb|FG960730.1|FG960730
genomic: AGTGTCATATATCTCATGATGTAAACCACCTTCATGAAGGACTTAAGCATgtaagttatg ... tttcctgcagGGTTTGAAGTCAGAACTTGAGAAGGCTTCACCTTCACTGGGTCGCACTGCT
EST: AGTGTCATATATCTCATGATGTAAACCACCTTCATGAAGGACTTAAGCAT GGTTTGAAGTCAGAACTTGAGAAGGCTTCACCTTCACTGGGTCGCACTGCTEST: gi|29615343|gb|CB620355.1|CB620355
genomic: AGTGTCATATATCTCATGATGTAAACCACCTTCATGAAGGACTTAAGCATgtaagttatg ... tttcctgcagGGTTTGAAGTCAGAACTTGAGAAGGCTTCACCTTCACTGGGTCGCACTGCT
EST: AGTGTCATATATCTCATGATGTAAACCACCTTCATGAAGGACTTAAGCAT GGTTTGAAGTCEST: gi|66916241|gb|CX103089.1|CX103089
genomic: AGTGTCATATATCTCATGATGTAAACCACCTTCATGAAGGACTTAAGCATgtaagttatg ... tttcctgcagGGTTTGAAGTC
EST: AGTGTCATATATCTCATGATGTAAACCACCTTCATGAAGGACTTAAGCAT GGTTTGAAGTCAGAACTTGAGAAGGCTTCACCTTCACTGGGTCGCACTGCT
genomic: AGTGTCATATATCTCATGATGTAAACCACCTTCATGAAGGACTTAAGCATgtaagttatg ... tttcctgcagGGTTTGAAGTCAGAACTTGAGAAGGCTTCACCTTCACTGGGTCGCACTGCT
cctcagaatttgtatgagaaggcccatgtaattattcttgtattctttcctgcagGGTTTGAAGTCAGAACTTGAGAAGGCTTCACCTTCACTGGGTCGCACTGCTCTTTATACAAGAGAGTCAAGAATAAATGAGTTGCCTAG
ttcttgtattctttcc CT-rich tract
taattattcttgtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttatgttaccattattaaactcataatttctattttatatcgagtagctcattgctgattctgacaggatagttttttatgtgtacattatttttatactatgcttgcataaaacctcagaatttgtatgagaaggcccatgtaattattcttgtattctttcctgcagGGTTTGAAGTCAGAACTTGAGAAGGCTTCACCTTCACTGGGTCGCACTGCTCTTTATACAAGAGAGTCAAGAATAAATGAGTTGCCTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA