1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tgtgtgacaatttagtcttcggtgcaatagaacaagtaattctacattctgattatgtattaaaatgattgacttcctaactgagggttcattgtttcagATAATAAATGTGTACAACCAAGAATATGAAAGTGCAGCAGCATTTTGGCCAAGTGTTCATGGACGCATAATTGTAGCATTAATCGTATCACAGCTGCTTC
species | Oryza sativa |
transcript | LOC_Os01g35050.3 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CTTTCATATTAATATTCTTTGGGTTAGCATATGTGGTATACCGTCACCAG ATAATAAATGTGTACAACCAAGAATATGAAAGTGCAGCAGCATTTTGGCCAEST: gi|218495655|gb|FG950469.1|FG950469
genomic: CTTTCATATTAATATTCTTTGGGTTAGCATATGTGGTATACCGTCACCAGgtaataaccc ... attgtttcagATAATAAATGTGTACAACCAAGAATATGAAAGTGCAGCAGCATTTTGGCCA
EST: CTTTCATATTAATATTCTTTGGGTTAGCATATGTGGTATACCGTCACCAG ATAATAAATGTGTACAACCAAGAATATGAAAGTGCAGCAGCATTTTGGCCAEST: gi|86597881|gb|CI276667.1|CI276667
genomic: CTTTCATATTAATATTCTTTGGGTTAGCATATGTGGTATACCGTCACCAGgtaataaccc ... attgtttcagATAATAAATGTGTACAACCAAGAATATGAAAGTGCAGCAGCATTTTGGCCA
EST: GTTAGCATATGTGGTATACCGTCACCAG ATAATAAATGTGTACAACCAAGAATATGAAAGTGCAGCAGCATTTTGGCCAEST: gi|218496990|gb|FG950833.1|FG950833
genomic: GTTAGCATATGTGGTATACCGTCACCAGgtaataaccc ... attgtttcagATAATAAATGTGTACAACCAAGAATATGAAAGTGCAGCAGCATTTTGGCCA
EST: CTTTCATATTAATATTCTTTGGGTTAGCATATGTGGTATACCGTCACCAG ATAATAAATGTGTACAACCAAGAATATGAAAGTGCAGCAGCATTTTGGCCAEST: gi|66926022|gb|CX112870.1|CX112870
genomic: CTTTCATATTAATATTCTTTGGGTTAGCATATGTGGTATACCGTCACCAGgtaataaccc ... attgtttcagATAATAAATGTGTACAACCAAGAATATGAAAGTGCAGCAGCATTTTGGCCA
EST: CTTTCATATTAATATTCTTTGGGTTAGCATATGTGGTATACCGTCACCAG ATAATAAATGTGTACAACCAAEST: gi|218495590|gb|FG944779.1|FG944779
genomic: CTTTCATATTAATATTCTTTGGGTTAGCATATGTGGTATACCGTCACCAGgtaataaccc ... attgtttcagATAATAAATGTGTACAACCAA
EST: CTTTCATATTAATATTCTTTGGGTTAGCATATGTGGTATACCGTCACCAG ATAATAAATGTGTACAACCAAGAATA
genomic: CTTTCATATTAATATTCTTTGGGTTAGCATATGTGGTATACCGTCACCAGgtaataaccc ... attgtttcagATAATAAATGTGTACAACCAAGAATA
attctgattatgtattaaaatgattgacttcctaactgagggttcattgtttcagATAATAAATGTGTACAACCAAGAATATGAAAGTGCAGCAGCATTTTGGCCAAGTGTTCATGGACGCATAATTGTAGCATTAATCGTATCACAGCTGCTTC
tcctaac putative branch site (score: 1)
ttgtttc putative PPT
attatgtattaaaatg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtgtgacaatttagtcttcggtgcaatagaacaagtaattctacattctgattatgtattaaaatgattgacttcctaactgagggttcattgtttcagATAATAAATGTGTACAACCAAGAATATGAAAGTGCAGCAGCATTTTGGCCAAGTGTTCATGGACGCATAATTGTAGCATTAATCGTATCACAGCTGCTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT