1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gttagattacaagctttcaatgaatacatgttatctatttttatgcaccagcttcttacctgtggaatgtatttttcagTGTGCTGCAGGAAAATGCTTATATGATCGGCTCAAGTTGTTTCCTAATTTGCTTTCTCCATCAACACGGCCTCTTTTGAGGAGTAATAAGAGAGTCGTGA
species | Oryza sativa |
transcript | LOC_Os01g32750.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AAAATGAGATGAAAAGAAAGGAAGCATGGCGTGTTTATGGTGCCCTGCTG TGTGCTGCAGGAAAATGCTTATATGATCGGCTCAAGTTGTTTCCTAATTTGEST: gi|27548087|gb|CA766146.2|CA766146
genomic: AAAATGAGATGAAAAGAAAGGAAGCATGGCGTGTTTATGGTGCCCTGCTGgttagattac ... tatttttcagTGTGCTGCAGGAAAATGCTTATATGATCGGCTCAAGTTGTTTCCTAATTTG
EST: AAAATGAGATGAAAAGAAAGGAAGCATGGCGTGTTTATGGTGCCCTGCTG TGTGCTGCAGGAAAATGCTTATATGATCGGCTCAAGTTGTTTCCTAATTTGEST: gi|428421|gb|D24570.1|D24570
genomic: AAAATGAGATGAAAAGAAAGGAAGCATGGCGTGTTTATGGTGCCCTGCTGgttagattac ... tatttttcagTGTGCTGCAGGAAAATGCTTATATGATCGGCTCAAGTTGTTTCCTAATTTG
EST: AAAATGAGATGAAAAGAAAGGAAGCATGGCGTGTTTATGGTGCCCTGCTG TGTGCTGCAGGAAAATGCTTATATGATCGGCTCAAGTTGTTTCCTAATTTGEST: gi|29614713|gb|CB619726.1|CB619726
genomic: AAAATGAGATGAAAAGAAAGGAAGCATGGCGTGTTTATGGTGCCCTGCTGgttagattac ... tatttttcagTGTGCTGCAGGAAAATGCTTATATGATCGGCTCAAGTTGTTTCCTAATTTG
EST: AAAATGAGATGAAAAGAAAGGAAGCATGGCGTGTTTATGGTGCCCTGCTG TGTGCTGCAGGAAAATGCTTATATGATCGGCTCAAGTTGTTTCCTAATTTGEST: gi|29681489|gb|CB677764.1|CB677764
genomic: AAAATGAGATGAAAAGAAAGGAAGCATGGCGTGTTTATGGTGCCCTGCTGgttagattac ... tatttttcagTGTGCTGCAGGAAAATGCTTATATGATCGGCTCAAGTTGTTTCCTAATTTG
EST: AAAATGAGATGAAAAGAAAGGAAGCATGGCGTGTTTATGGTGCCCTGCTG TGTGCTGCAGGAAAATGCTTATATGATCGGCTCAAGTTGTTTCCTAATTTG
genomic: AAAATGAGATGAAAAGAAAGGAAGCATGGCGTGTTTATGGTGCCCTGCTGgttagattac ... tatttttcagTGTGCTGCAGGAAAATGCTTATATGATCGGCTCAAGTTGTTTCCTAATTTG
tacatgttatctatttttatgcaccagcttcttacctgtggaatgtatttttcagTGTGCTGCAGGAAAATGCTTATATGATCGGCTCAAGTTGTTTCCTAATTTGCTTTCTCCATCAACACGGCCTCTTTTGAGGAGTAATAAGAGAGTCGTGA
ttcttac putative branch site (score: 15)
tatttttc putative PPT
ttatctatttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagattacaagctttcaatgaatacatgttatctatttttatgcaccagcttcttacctgtggaatgtatttttcagTGTGCTGCAGGAAAATGCTTATATGATCGGCTCAAGTTGTTTCCTAATTTGCTTTCTCCATCAACACGGCCTCTTTTGAGGAGTAATAAGAGAGTCGTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA