1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaggagccttcacatttattttgttcctcttattttcagagttaatgtctcctgcttactatttataaattataatgtgtattctaattatgcatactttcaccagATCTTTCATAAAAGAATGCCATCTGAAGCTGTAGATCTTGTGTCTCGGCTTCTGCAGTACTCACCACACCTCCGGTGCAGTGCA
species | Oryza sativa |
transcript | LOC_Os01g19150.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ACTACACTGAGTTTAAGTTCCCCCAAATCAAAGCTCACCCATGGCACAAG ATCTTTCATAAAAGAATGCCATCTGAAGCTGTAGATCTTGTGTCTCGGCTTEST: gi|29628248|gb|CB633259.1|CB633259
genomic: ACTACACTGAGTTTAAGTTCCCCCAAATCAAAGCTCACCCATGGCACAAGgtaggagcct ... ctttcaccagATCTTTCATAAAAGAATGCCATCTGAAGCTGTAGATCTTGTGTCTCGGCTT
EST: ACTACACTGAGTTTAAGTTCCCCCAAATCAAAGCTCACCCATGGCACAAG ATCTTTCATAAAAGAATGCCATCTGAAGCTGTAGATCTTGTGTCTCGGCTTEST: gi|33683226|gb|CF311465.1|CF311465
genomic: ACTACACTGAGTTTAAGTTCCCCCAAATCAAAGCTCACCCATGGCACAAGgtaggagcct ... ctttcaccagATCTTTCATAAAAGAATGCCATCTGAAGCTGTAGATCTTGTGTCTCGGCTT
EST: CTACACTGAGTTTAAGTTTCCCCCAAATCAAAGCTCACCCATGGCACAAG ATCTTTCATAAAAGAATGCCATCTGAAGCTGTAGATCTTGTGTCTCGGCTTEST: gi|29668964|gb|CB665239.1|CB665239
genomic: CTACACTGAGTTTAAGTT-CCCCCAAATCAAAGCTCACCCATGGCACAAGgtaggagcct ... ctttcaccagATCTTTCATAAAAGAATGCCATCTGAAGCTGTAGATCTTGTGTCTCGGCTT
EST: ACTACACTGAGTTTAAGTTCCCCCAAATCAAAGCTCACCCATGGCACAAG ATCTTTCATAAAAGAATGCCATCTGAAGCTGTAGATCTTGTGTCTCGGCTTEST: gi|29668828|gb|CB665103.1|CB665103
genomic: ACTACACTGAGTTTAAGTTCCCCCAAATCAAAGCTCACCCATGGCACAAGgtaggagcct ... ctttcaccagATCTTTCATAAAAGAATGCCATCTGAAGCTGTAGATCTTGTGTCTCGGCTT
EST: ACTACACTGAGTTTAAGTTCCCCCAAATCAAAGCTCACCCATGGCACAAG ATCTTTCATAAAAGAATGCCATCTGAAGCTGTAGATCTTGTGTCTCGGCTTEST: gi|8856575|gb|AU093893.1|AU093893
genomic: ACTACACTGAGTTTAAGTTCCCCCAAATCAAAGCTCACCCATGGCACAAGgtaggagcct ... ctttcaccagATCTTTCATAAAAGAATGCCATCTGAAGCTGTAGATCTTGTGTCTCGGCTT
EST: CTACACTGAGTTTAAG-TCCCCCAAAATCAAAGCTCACCCATGGCACAAG ATCTTTCATAAAAGAATGCCATCTGAAGCTGTAGATCTTGTGTCTCGGCTTEST: gi|58675098|gb|CK063785.1|CK063785
genomic: CTACACTGAGTTTAAGTTCCCCC-AAATCAAAGCTCACCCATGGCACAAGgtaggagcct ... ctttcaccagATCTTTCATAAAAGAATGCCATCTGAAGCTGTAGATCTTGTGTCTCGGCTT
EST: ACTACACTGAGTTTAAGTTCCCCCAAATCAAAGCTCACCCATGGCACAAG ATCTTTCATAAAAGAATGCCATCTGAAGCTGTAGATCTTGTGTCTCGGCTTEST: gi|29666430|gb|CB662705.1|CB662705
genomic: ACTACACTGAGTTTAAGTTCCCCCAAATCAAAGCTCACCCATGGCACAAGgtaggagcct ... ctttcaccagATCTTTCATAAAAGAATGCCATCTGAAGCTGTAGATCTTGTGTCTCGGCTT
EST: ACTACACTGAGTTTAAGTTCCCCCAAATCAAAGCTCACCCATGGCACAAG ATCTTTCATAAAAGAATGCCATCTGAAGCTGTAGATCTTGTGTCTCGGCTTEST: gi|29614478|gb|CB619491.1|CB619491
genomic: ACTACACTGAGTTTAAGTTCCCCCAAATCAAAGCTCACCCATGGCACAAGgtaggagcct ... ctttcaccagATCTTTCATAAAAGAATGCCATCTGAAGCTGTAGATCTTGTGTCTCGGCTT
EST: AGTTTAAGTTCCCCCAAATCAAAGCTCACCCATGGCACAAG ATCTTTCATAAAAGAATGCCATCTGAAGCTGTAGATCTTGTGTCTCGGCTTEST: gi|29645803|gb|CB650810.1|CB650810
genomic: AGTTTAAGTTCCCCCAAATCAAAGCTCACCCATGGCACAAGgtaggagcct ... ctttcaccagATCTTTCATAAAAGAATGCCATCTGAAGCTGTAGATCTTGTGTCTCGGCTT
EST: NCTACACTGAGTTTAAGTTCCCCCAAATCAAAGCTCACCCATGGCACAAG ATCTTTCATAAAAGAATGCCATCTGAAGCTGTAGATCTTGTGTCTCGGCTTEST: gi|29676371|gb|CB672646.1|CB672646
genomic: ACTACACTGAGTTTAAGTTCCCCCAAATCAAAGCTCACCCATGGCACAAGgtaggagcct ... ctttcaccagATCTTTCATAAAAGAATGCCATCTGAAGCTGTAGATCTTGTGTCTCGGCTT
EST: TTTAAGTTCCCCCAAATCAAAGCTCACCCATGGCACAAG ATCTTTCATAAAAGAATGCCATCTGAAGCTGTAGATCTTGTGTCTCGGCTTEST: gi|29666992|gb|CB663267.1|CB663267
genomic: TTTAAGTTCCCCCAAATCAAAGCTCACCCATGGCACAAGgtaggagcct ... ctttcaccagATCTTTCATAAAAGAATGCCATCTGAAGCTGTAGATCTTGTGTCTCGGCTT
EST: ACTACACTGAGTTTAAGTTCCCCCAAATCAAAGCTCACCCATGGCACAAG ATCTTTCATAAAAGAATGCCATCTGAAGCTGTAGATCTTGTGTCTCGGCTTEST: gi|29666993|gb|CB663268.1|CB663268
genomic: ACTACACTGAGTTTAAGTTCCCCCAAATCAAAGCTCACCCATGGCACAAGgtaggagcct ... ctttcaccagATCTTTCATAAAAGAATGCCATCTGAAGCTGTAGATCTTGTGTCTCGGCTT
EST: AGTTTAAGTTCCCCCAAATCAAAGCTCACCCATGGCACAAG ATCTTTCATAAAAGAATGCCATCTGAAGCTGTAGATCTTGTGTCTCGGCTTEST: gi|29628183|gb|CB633194.1|CB633194
genomic: AGTTTAAGTTCCCCCAAATCAAAGCTCACCCATGGCACAAGgtaggagcct ... ctttcaccagATCTTTCATAAAAGAATGCCATCTGAAGCTGTAGATCTTGTGTCTCGGCTT
EST: ACTACACTGAGTTTAAGTTCCCCCAAATCAAAGCTCACCCATGGCACAAG ATCTTTCATAAAAGAATGCCATCTGAAGCTGTAGATCTTGTGTCTCGGCTTEST: gi|29666642|gb|CB662917.1|CB662917
genomic: ACTACACTGAGTTTAAGTTCCCCCAAATCAAAGCTCACCCATGGCACAAGgtaggagcct ... ctttcaccagATCTTTCATAAAAGAATGCCATCTGAAGCTGTAGATCTTGTGTCTCGGCTT
EST: ACTACACTGAGTTTAAGTTCCCCCAAATCAAAGCTCACCCATGGCACAAG ATCTTTCATAAAAGAATGCCATCTGAAGCTGTAGATCTTGTGTCTCGGCTTEST: gi|218502361|gb|FG956952.1|FG956952
genomic: ACTACACTGAGTTTAAGTTCCCCCAAATCAAAGCTCACCCATGGCACAAGgtaggagcct ... ctttcaccagATCTTTCATAAAAGAATGCCATCTGAAGCTGTAGATCTTGTGTCTCGGCTT
EST: ACTACACTGAGTTTAAGTTCCCCCAAATCAACGCTCACCCATGGCACAAG ATCTTTCATTAAAGAATGCCATCTGAAGCTGTAGATCTTGTGTCTCGGCTTEST: gi|29674068|gb|CB670343.1|CB670343
genomic: ACTACACTGAGTTTAAGTTCCCCCAAATCAAAGCTCACCCATGGCACAAGgtaggagcct ... ctttcaccagATCTTTCATAAAAGAATGCCATCTGAAGCTGTAGATCTTGTGTCTCGGCTT
EST: ACTACACTGAGTTTAAGTTCCCCCAAATCAAAGCTCACCCATGGCACAAG ATCTTTCATAAAAGAATGCCATCTGAAGCTGTAGATCTTGTGTCTCGGCTTEST: gi|29623354|gb|CB628365.1|CB628365
genomic: ACTACACTGAGTTTAAGTTCCCCCAAATCAAAGCTCACCCATGGCACAAGgtaggagcct ... ctttcaccagATCTTTCATAAAAGAATGCCATCTGAAGCTGTAGATCTTGTGTCTCGGCTT
EST: ACTACACTGAGTTTAAGTTCCCCCAAATCAAAGCTCACCCATGGCACAAG ATCTTTCATAAAAGAATGCCATCTGAAGCTGTAGATCTTGTGTCTCGGCTTEST: gi|29668829|gb|CB665104.1|CB665104
genomic: ACTACACTGAGTTTAAGTTCCCCCAAATCAAAGCTCACCCATGGCACAAGgtaggagcct ... ctttcaccagATCTTTCATAAAAGAATGCCATCTGAAGCTGTAGATCTTGTGTCTCGGCTT
EST: ACTACACTGAGTTTAAGTTCCCCCAAATCAAAGCTCACCCATGGCACAAG ATCTTTCATAAAAGAATGCCATCTGAAGCTGTAGATCTTGTGTCTCGGCTT
genomic: ACTACACTGAGTTTAAGTTCCCCCAAATCAAAGCTCACCCATGGCACAAGgtaggagcct ... ctttcaccagATCTTTCATAAAAGAATGCCATCTGAAGCTGTAGATCTTGTGTCTCGGCTT
ctgcttactatttataaattataatgtgtattctaattatgcatactttcaccagATCTTTCATAAAAGAATGCCATCTGAAGCTGTAGATCTTGTGTCTCGGCTTCTGCAGTACTCACCACACCTCCGGTGCAGTGCA
ttctaat putative branch site (score: 2)
ctttcacc putative PPT
tatttataaattataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggagccttcacatttattttgttcctcttattttcagagttaatgtctcctgcttactatttataaattataatgtgtattctaattatgcatactttcaccagATCTTTCATAAAAGAATGCCATCTGAAGCTGTAGATCTTGTGTCTCGGCTTCTGCAGTACTCACCACACCTCCGGTGCAGTGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG