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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaatgccacagcacactcctttcttgtgcaatgtacattcaggaaggattgcatatcagctggtacttacatcatcactcttgatcttcagGTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCATGGAGATCCTATATTGTATAGACAG

Basic information

species Oryza sativa
transcript LOC_Os01g18800.4
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29681596|gb|CB677871.1|CB677871
EST:     GGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAG                         GTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCAT
genomic: GGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAGgtaaaatgcc ... tgatcttcagGTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCAT
EST: gi|88547867|gb|CI478195.1|CI478195
EST:     GGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAG                         GTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCAT
genomic: GGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAGgtaaaatgcc ... tgatcttcagGTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCAT
EST: gi|86851934|gb|CI316503.1|CI316503
EST:     GGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAG                         GTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAAAAATCCCAT
genomic: GGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAGgtaaaatgcc ... tgatcttcagGTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCAT
EST: gi|4716471|gb|AU057587.1|AU057587
EST:     GGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAG                         GTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCAT
genomic: GGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAGgtaaaatgcc ... tgatcttcagGTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCAT
EST: gi|88255164|gb|CI353988.1|CI353988
EST:     GGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAG                         GTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCAT
genomic: GGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAGgtaaaatgcc ... tgatcttcagGTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCAT
EST: gi|86865529|gb|CI330965.1|CI330965
EST:     GGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAG                         GTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCAT
genomic: GGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAGgtaaaatgcc ... tgatcttcagGTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCAT
EST: gi|58691448|gb|CK080135.1|CK080135
EST:     AGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAG                         GTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCAT
genomic: GGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAGgtaaaatgcc ... tgatcttcagGTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCAT
EST: gi|89178091|gb|CI391270.1|CI391270
EST:     GGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAG                         GTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCAT
genomic: GGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAGgtaaaatgcc ... tgatcttcagGTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCAT
EST: gi|29620378|gb|CB625390.1|CB625390
EST:     AGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAG                         GTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCAT
genomic: GGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAGgtaaaatgcc ... tgatcttcagGTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCAT
EST: gi|86908767|gb|CI319031.1|CI319031
EST:     -GGGTTCAAAGAACCTCA-GAATCCATCATCATTCTTGGTCTGTACTGAG                         GTAGTCGAGCTCGGGCCATCCTTATATTTTGTCGAATTGAAGAAATCCCAT
genomic: GGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAGgtaaaatgcc ... tgatcttcagGTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCAT
EST: gi|4714970|gb|AU056087.1|AU056087
EST:     GGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAG                         GTAGTCGAGCTCGGNCCATCCTTATATGTTGTCGAATTGAAGAAATCCCAT
genomic: GGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAGgtaaaatgcc ... tgatcttcagGTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCAT
EST: gi|2317562|gb|C22616.1|C22616
EST:     GGGTTCAAAGAACCTCAGGAATCCATCATCCATTCTTGGTCTGTACTGAG                         GTAGTCGAGCTCGGGCCCATCCCTTATATGTTGTCGAATTGAAGAAATCCC
genomic: GGGTTCAAAGAACCTCAGGAATCCATCAT-CATTCTTGGTCTGTACTGAGgtaaaatgcc ... tgatcttcagGTAGTCGAGCTCGGG-CCAT-CCTTATATGTTGTCGAATTGAAGAAAT-CC
EST: gi|86852707|gb|CI321827.1|CI321827
EST:     GGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAG                         GTAGTCGAGCTCGGGCCATCCTTATATGGTTGTCGAATTGAAGAAATCCCA
genomic: GGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAGgtaaaatgcc ... tgatcttcagGTAGTCGAGCTCGGGCCATCCTTATAT-GTTGTCGAATTGAAGAAATCCCA
EST: gi|33794290|gb|CF323032.1|CF323032
EST:     GGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAG                         GTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCAT
genomic: GGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAGgtaaaatgcc ... tgatcttcagGTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCAT
EST: gi|4714969|gb|AU056086.1|AU056086
EST:     GGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAG                         GTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCAT
genomic: GGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAGgtaaaatgcc ... tgatcttcagGTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCAT
EST: gi|29685924|gb|CB682199.1|CB682199
EST:     GGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAG                         GTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCAT
genomic: GGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAGgtaaaatgcc ... tgatcttcagGTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCAT
EST: gi|33656212|gb|CF278826.1|CF278826
EST:     GGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAG                         GTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCAT
genomic: GGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAGgtaaaatgcc ... tgatcttcagGTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCAT
EST: gi|29614338|gb|CB619351.1|CB619351
EST:     AGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAG                         GTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCAT
genomic: GGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAGgtaaaatgcc ... tgatcttcagGTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCAT
EST: gi|86873660|gb|CI341093.1|CI341093
EST:     GGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAG                         GTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCAT
genomic: GGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAGgtaaaatgcc ... tgatcttcagGTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCAT
EST: gi|29626405|gb|CB631416.1|CB631416
EST:     AGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAG                         GTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCAT
genomic: GGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAGgtaaaatgcc ... tgatcttcagGTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCAT
EST: gi|88552542|gb|CI482556.1|CI482556
EST:     GGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAG                         GTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCAT
genomic: GGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAGgtaaaatgcc ... tgatcttcagGTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCAT
EST: gi|86841350|gb|CI336379.1|CI336379
EST:     GGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAG                         GTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCAT
genomic: GGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAGgtaaaatgcc ... tgatcttcagGTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCAT
EST: gi|88843115|gb|CI372015.1|CI372015
EST:     GGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAG                         GTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCAT
genomic: GGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAGgtaaaatgcc ... tgatcttcagGTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCAT
EST: gi|7608753|gb|AU090534.1|AU090534
EST:     GGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAG                         GTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCAT
genomic: GGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAGgtaaaatgcc ... tgatcttcagGTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCAT
EST: gi|88554882|gb|CI485095.1|CI485095
EST:     GGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAG                         GTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCAT
genomic: GGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAGgtaaaatgcc ... tgatcttcagGTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCAT
EST: gi|88852458|gb|CI374226.1|CI374226
EST:     GGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAG                         GTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCAT
genomic: GGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAGgtaaaatgcc ... tgatcttcagGTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCAT
EST: gi|89181904|gb|CI113410.1|CI113410
EST:     GGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAG                         GTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCAT
genomic: GGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAGgtaaaatgcc ... tgatcttcagGTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCAT
EST: gi|29638650|gb|CB643659.1|CB643659
EST:     GGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAG                         GTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCAT
genomic: GGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAGgtaaaatgcc ... tgatcttcagGTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCAT
EST: gi|88270625|gb|CI385883.1|CI385883
EST:     GGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAG                         GTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCAT
genomic: GGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAGgtaaaatgcc ... tgatcttcagGTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCAT
EST: gi|86908580|gb|CI318936.1|CI318936
EST:     GGGTTCAAAGAACCTCACGGAATCCATCATCATTCTTGGTCTGTACTGAG                         GTAATCGAGGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCA
genomic: GGGTTCAAAGAACCTCA-GGAATCCATCATCATTCTTGGTCTGTACTGAGgtaaaatgcc ... tgatcttcagGTAGTCGA-GCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCA
EST: gi|88197193|gb|CI197043.1|CI197043
EST:     GGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAG                         GTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCAT
genomic: GGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAGgtaaaatgcc ... tgatcttcagGTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCAT
EST: gi|88548764|gb|CI478588.1|CI478588
EST:     GGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAG                         GTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCAT
genomic: GGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAGgtaaaatgcc ... tgatcttcagGTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCAT
EST: gi|86876443|gb|CI318423.1|CI318423
EST:     GGGGTTCAAAGAACCTCA-GAATCCATCATCATTCTTGGTCTGTACTGAG                         GTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCAT
genomic: GGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAGgtaaaatgcc ... tgatcttcagGTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCAT
EST: gi|88905990|gb|CI089576.1|CI089576
EST:     GGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAG                         GTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCAT
genomic: GGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAGgtaaaatgcc ... tgatcttcagGTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCAT
EST: gi|29687811|gb|CB684086.1|CB684086
EST:     GGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAG                         GTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCAT
genomic: GGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAGgtaaaatgcc ... tgatcttcagGTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCAT
EST: gi|88264315|gb|CI368089.1|CI368089
EST:     GGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAG                         GTAGGTCGAGCTCGGCCCATCCTTATATGTTGTCGAATTGAAGAAATCCCA
genomic: GGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAGgtaaaatgcc ... tgatcttcagGTA-GTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCA
EST: gi|86852723|gb|CI321843.1|CI321843
EST:     GGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAG                         GTAGTCGAGCTCGGCCCATCCTTATATGTTGTCGAATTGAAGAAATCCCAT
genomic: GGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAGgtaaaatgcc ... tgatcttcagGTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCAT
EST: gi|58681853|gb|CK070540.1|CK070540
EST:     AGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAG                         GTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCAT
genomic: GGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAGgtaaaatgcc ... tgatcttcagGTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCAT
EST: gi|58593223|gb|CF991531.1|CF991531
EST:     AGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAG                         GTAGTCGAGCTCGGGCCATCGGGGATATGTTGTCGAATTGAAGAAATCCCA
genomic: GGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAGgtaaaatgcc ... tgatcttcagGTAGTCGAGCTCGGGCCATCCTT-ATATGTTGTCGAATTGAAGAAATCCCA
EST: gi|88286727|gb|CI517838.1|CI517838
EST:     GGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAG                         GTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCAT
genomic: GGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAGgtaaaatgcc ... tgatcttcagGTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attcaggaaggattgcatatcagctggtacttacatcatcactcttgatcttcagGTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCATGGAGATCCTATATTGTATAGACAG
                                      tcactctt  CT-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaaaatgccacagcacactcctttcttgtgcaatgtacattcaggaaggattgcatatcagctggtacttacatcatcactcttgatcttcagGTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCATGGAGATCCTATATTGTATAGACAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC