Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtggctccctcagtgacacacttggcccatcctcttaagctatactcatgcttttctaaatctcaccgtcgtcttcttcaactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTG

Basic information

species Oryza sativa
transcript LOC_Os01g18630.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g18630.1 (Oryza sativa), 3'ss of exon 10
lower sequence: GRMZM2G077233_T04 (Zea mays), 3'ss of exon 10
--------------------------------------------------------------------gtggctccctcagtgaca---cacttggcccatcctcttaagc-tatactcatgctt-ttctaaatctca-----ccgtcgtcttcttcaactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTG
                                                                     |   |  |  ||| |||   || ||     ||  ||||  |   | ||  || ||| |||||  ||||      ||   |  | | |      |||||||| ||||||||||||||||   ||| |||||| | |||||||| ||||| ||||| || ||||| || ||||| || || || |||||
gtaactccctacttacagtttcttcagtgtttgaattagtagtgaaacattgtctagggaaccatgatctcattttcaaagttacagttcatttattggatattctttggtgcaaacatatacttcttctatttctcttgaatccactgattgcctttgtgctgcagTACATAGTGAAGCTGGAGCAAGCAGGACAAACTATCTGCATCAGTGGGTTTATGGCATTTGACGTACCGCCTCCTCGTGGTCCTCTCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88466426|gb|CI529835.1|CI529835
EST:     TCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: TCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|29631070|gb|CB636079.1|CB636079
EST:     ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|86873001|gb|CI326998.1|CI326998
EST:     ATAGCAAACAAGACCTTCACCTTGACACCAGAGCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: ATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|29643124|gb|CB648131.1|CB648131
EST:     ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|86869677|gb|CI322163.1|CI322163
EST:     ACCTTTCATTCACCATAGC-AACAAGACCTTCACC-TGACACCAGAGCAG                         TACGTAGTGAAGCTGGAGCAGCCAAGGTCAAACTGTTTGCATCAGCGGGTT
genomic: ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAG-CAAGGTCAAACTGTTTGCATCAGCGGGTT
EST: gi|15853958|gb|BI806754.1|BI806754
EST:     CCTTTCATTCACCAGTAGC--AC-AGACCTTCACCTTGACACCAGAGCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: CCTTTCATTCACCA-TAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|29631103|gb|CB636112.1|CB636112
EST:     ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|86876454|gb|CI318429.1|CI318429
EST:     ACCTTTCATTCACCATATCAAACAAGACCTTCACCTTTACACCAGAGCAG                         TACGTAGTGAAGGCTGGAGCAGGCAAGGTCAAACTGTTTGCATCAGCGGGT
genomic: ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAA-GCTGGAGCA-GCAAGGTCAAACTGTTTGCATCAGCGGGT
EST: gi|89195188|gb|CI051301.1|CI051301
EST:     ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|88993436|gb|CI257864.1|CI257864
EST:     TGACACCAGAGCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: TGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|88844256|gb|CI005629.1|CI005629
EST:     CCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: CCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|89185110|gb|CI049656.1|CI049656
EST:     ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|86872026|gb|CI333187.1|CI333187
EST:     ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAG                         TACGTATTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|29662754|gb|CB659029.1|CB659029
EST:     ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|87022160|gb|CI259232.1|CI259232
EST:     ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|427672|gb|D23806.1|D23806
EST:     CTTCACCTTGACACCAGAGCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: CTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|86825066|gb|CI358229.1|CI358229
EST:     ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAA                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|89198402|gb|CI007462.1|CI007462
EST:     ACACCAGAGCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: ACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|88252147|gb|CI350575.1|CI350575
EST:     ACCTGTCATTCACCATAGCAAACAATACCTTCACC-TGACACCAGAGCAG                         TACGGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCCGGGT
genomic: ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTAC-GTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAG-CGGGT
EST: gi|86876456|gb|CI318430.1|CI318430
EST:     ACCTTTCATTCACCATACCAAACAAGACCTTCACCTTGACACCAGAGCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|86907659|gb|CI296618.1|CI296618
EST:     ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|86423128|gb|CI060701.1|CI060701
EST:     TGACACCAGAGCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: TGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|218493897|gb|FG949292.1|FG949292
EST:     ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|86841464|gb|CI336450.1|CI336450
EST:     CCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: CCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|29665540|gb|CB661815.1|CB661815
EST:     ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|86886269|gb|CI335972.1|CI335972
EST:     ACACCAGAGCAG                         TAGGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: ACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|29645988|gb|CB650995.1|CB650995
EST:     ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|87029011|gb|CI351314.1|CI351314
EST:     ATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: ATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|86836859|gb|CI347447.1|CI347447
EST:     ACCCTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|86884877|gb|CI314453.1|CI314453
EST:     ACCTTTCATTCACCATAGCAAACAAGACCTTCACC-TGACACCAGAGCAG                         TACGTAGTTAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGC-GGTTC
genomic: ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|86430021|gb|CI082444.1|CI082444
EST:     ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|29664682|gb|CB660957.1|CB660957
EST:     ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|87022142|gb|CI259214.1|CI259214
EST:     ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|86853703|gb|CI330554.1|CI330554
EST:     ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|88993443|gb|CI257871.1|CI257871
EST:     ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|29639119|gb|CB644128.1|CB644128
EST:     ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|29683212|gb|CB679487.1|CB679487
EST:     ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|88264965|gb|CI368739.1|CI368739
EST:     TCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: TCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|86872998|gb|CI326995.1|CI326995
EST:     ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGACCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|86874941|gb|CI325397.1|CI325397
EST:     CCATAGCAAACAAGACCTTCACCTTGACACCAGACCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: CCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|27578101|gb|CB000796.1|CB000796
EST:     ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|88257706|gb|CI360292.1|CI360292
EST:     CACCAGAGCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: CACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|86416575|gb|CI030586.1|CI030586
EST:     ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|86864150|gb|CI334002.1|CI334002
EST:     ACCTTTACACCAGAGCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: ACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|86828240|gb|CI276836.1|CI276836
EST:     ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|86254951|gb|CI017071.1|CI017071
EST:     ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 61 (upstream exon), 72 (downstream exon)
Score: 39

CCCCAATGGCGAATCGGCAGTCGACTGCGATGAGATCTCAAACATGCCGAACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTG




<











<


<











 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaagctatactcatgcttttctaaatctcaccgtcgtcttcttcaactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTG
                                     tcttcttca  CT-rich tract
                 ttttctaaat  TA-rich tract