1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gaactgcattattctgcattggatgttcctttttggaaggtctattggagttttgggagctattgtaccgtttgtagatacccttgaccatctatcacagATTATTCTTCAGTTTCTTTATTTCCATTATCGGAAGCGACACGTTCCTGATGAGCCTGACAGTGCTGATAAAGTTTAATGGATAGCAACTGAGAATATTA
species | Oryza sativa |
transcript | LOC_Os01g16170.4 |
intron # | 10 |
splice site | 3' |
intron type | U12 (go to U12 genes for details) |
EST: ATCTACCGTGGCTTGTAGATGCTGGAGGATGTGTTTTGCTTGATACTTTT ATTATTCTTCAGTTTCTTTATTTCCATTATCGGAAGCGACACGTTCCTGATEST: gi|29667632|gb|CB663907.1|CB663907
genomic: ATCTACCGTGGCTTGTAGATGCTGGAGGATGTGTTTTGCTTGATACTTTTgtatcctttt ... tctatcacagATTATTCTTCAGTTTCTTTATTTCCATTATCGGAAGCGACACGTTCCTGAT
EST: ATCTACCGTGGCTTGTAGATGCTGGAGGATGTGTTTTGCTTGATACTTTT ATTATTCTTCAGTTTCTTTATTTCCATTATCGGAAGCGACACGTTCCTGATEST: gi|29672267|gb|CB668542.1|CB668542
genomic: ATCTACCGTGGCTTGTAGATGCTGGAGGATGTGTTTTGCTTGATACTTTTgtatcctttt ... tctatcacagATTATTCTTCAGTTTCTTTATTTCCATTATCGGAAGCGACACGTTCCTGAT
EST: ATCTACCGTGGCTTGTAGATGCTGGAGGATGTGTTTTGCTTGATACTTTT ATTATTCTTCAGTTTCTTTATTTCCATTATCGGAAGCGACACGTTCCTGATEST: gi|38481874|gb|CF965943.1|CF965943
genomic: ATCTACCGTGGCTTGTAGATGCTGGAGGATGTGTTTTGCTTGATACTTTTgtatcctttt ... tctatcacagATTATTCTTCAGTTTCTTTATTTCCATTATCGGAAGCGACACGTTCCTGAT
EST: GTTTAGCTTGATACTTTT ATTATTCTTCAGTTTCTTTATTTCCATTATCGGAAGCGACACGTTCCTGATEST: gi|29672268|gb|CB668543.1|CB668543
genomic: GTTTTGCTTGATACTTTTgtatcctttt ... tctatcacagATTATTCTTCAGTTTCTTTATTTCCATTATCGGAAGCGACACGTTCCTGAT
EST: ATCTACCGTGGCTTGTAGATGCTGGAGGATGTGTTTTGCTTGATACTTTT ATTATTCTTCAGTTTCTTTATTTCCATTATCGGAAGCGACACGTTCCTGAT
genomic: ATCTACCGTGGCTTGTAGATGCTGGAGGATGTGTTTTGCTTGATACTTTTgtatcctttt ... tctatcacagATTATTCTTCAGTTTCTTTATTTCCATTATCGGAAGCGACACGTTCCTGAT
tggagttttgggagctattgtaccgtttgtagatacccttgaccatctatcacagATTATTCTTCAGTTTCTTTATTTCCATTATCGGAAGCGACACGTTCCTGATGAGCCTGACAGTGCTGATAAAGTTTAATGGATAGCAACTGAGAATATTA
acccttgac putative branch site
tattgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaactgcattattctgcattggatgttcctttttggaaggtctattggagttttgggagctattgtaccgtttgtagatacccttgaccatctatcacagATTATTCTTCAGTTTCTTTATTTCCATTATCGGAAGCGACACGTTCCTGATGAGCCTGACAGTGCTGATAAAGTTTAATGGATAGCAACTGAGAATATTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT