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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggtatccattttataattctgtcagtaatattgtgtttcactttatttgttgcttaggtttcctttgtggtttcagGTGTCGCATTTGCAAAACATTTGATTCATCTGCATGCATATCAGCAACCAAATGAGACGCGGCAAGTTCTAGAG

Basic information

species Oryza sativa
transcript LOC_Os01g15020.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29628360|gb|CB633371.1|CB633371
EST:     CTGATGGAGACTTCCTTG                         GAGTCGCATTTGCAAAACATTTGATTCATCTGCATGCATATCAGCAACCAA
genomic: CTGATGGAGACTTGATAGgttggtatcc ... gtggtttcagGTGTCGCATTTGCAAAACATTTGATTCATCTGCATGCATATCAGCAACCAA
EST: gi|86888343|gb|CI303625.1|CI303625
EST:     TTCCATATCCATTAACCGGGTTACCTGGAGTCCTGATGGAGACTTGATAG                         GTGTCGCATTTGCAAAACATTTGATTCATCTGCATGCATATCAGCAACCAA
genomic: TTCCATATCCATTAACCGGGTTACCTGGAGTCCTGATGGAGACTTGATAGgttggtatcc ... gtggtttcagGTGTCGCATTTGCAAAACATTTGATTCATCTGCATGCATATCAGCAACCAA
EST: gi|29628115|gb|CB633126.1|CB633126
EST:     CTGATGGAGACTTGATAG                         GTGTCGCATTTGCAAAACATTTGATTCATCTGCATGCATATCAGCAACCAA
genomic: CTGATGGAGACTTGATAGgttggtatcc ... gtggtttcagGTGTCGCATTTGCAAAACATTTGATTCATCTGCATGCATATCAGCAACCAA
EST: gi|29643744|gb|CB648751.1|CB648751
EST:     TTCCATATCCATTAACCGGGTTACCTGGAGTCCTGATGGAGACTTGATAG                         GTGTCGCATTTGCAAAACATTTGATTCATCTGCATGCATATCAGCAACCAA
genomic: TTCCATATCCATTAACCGGGTTACCTGGAGTCCTGATGGAGACTTGATAGgttggtatcc ... gtggtttcagGTGTCGCATTTGCAAAACATTTGATTCATCTGCATGCATATCAGCAACCAA
EST: gi|58659276|gb|CK047956.1|CK047956
EST:     TTCCATATCCATTAACCGGGTTACCTGGAGTCCTGATGGAGACTTGATAG                         GTGTCGCATTTGCAAAACATTTGATTCATCTGCATGCATATCAGCAACCAA
genomic: TTCCATATCCATTAACCGGGTTACCTGGAGTCCTGATGGAGACTTGATAGgttggtatcc ... gtggtttcagGTGTCGCATTTGCAAAACATTTGATTCATCTGCATGCATATCAGCAACCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcagtaatattgtgtttcactttatttgttgcttaggtttcctttgtggtttcagGTGTCGCATTTGCAAAACATTTGATTCATCTGCATGCATATCAGCAACCAAATGAGACGCGGCAAGTTCTAGAG
                                     tttcctttgt  CT-rich tract
                    tttatttgtt  TA-rich tract