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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaatttttcccccatgcctttacgaattgaaaattacaaatttgttatgttcgttgcattttttgtttgatgtgtttatgcctagcctaacacttggtaaatcatatgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTGGTGTTGCCATCTACTCGTACATCAAGGCTAAGATCGAAGAGGAGAAAAG

Basic information

species Oryza sativa
transcript LOC_Os01g13770.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g13770.3 (Oryza sativa), 3'ss of exon 9
lower sequence: GRMZM2G070605_T01 (Zea mays), 3'ss of exon 10
gtaagtaatttttcccccatgcctttacgaattgaaaattacaaatttgttatgttcgttgcattttttgtttgatgtgtt--tatgcctagcctaacacttggtaaatcatatgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTGGTGTTGCCATCTACTCGTACATCAAGGCTAAGATCGAAGAGGAGAAAAG
                        | |      || | |  |            |   || |  |  |  | ||||||  |  | |  ||||| ||||||||| |||| |  |       ||||||||| ||||| |||||| ||||||||||| || | ||||||||||||||||||||| || ||||| ||||| ||||||||||| ||||||||||||||
-----------------------gtgagtggacgacagtccccccccccccccttgttttcccctgctgctgtgatgtaatgctctagctagc-taacacttgctaaacctca-------cagGCAACAAAATTAGCACACAAACTGGAATTGGCACGTCCATTGCCATAGCTGGTGTTGCTATGTACTCTTACATTAAGGCTAAGATTGAAGAGGAGAAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86848816|gb|CI295657.1|CI295657
EST:     CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG                         GCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAG
genomic: CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAG
EST: gi|29661885|gb|CB658160.1|CB658160
EST:     CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG                         GCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
genomic: CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
EST: gi|86598026|gb|CI278416.1|CI278416
EST:     CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG                         GCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
genomic: CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
EST: gi|29685282|gb|CB681557.1|CB681557
EST:     CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG                         GCAACAGAATTCCCCCACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
genomic: CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
EST: gi|88215807|gb|CI215656.1|CI215656
EST:     CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG                         GCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
genomic: CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
EST: gi|29687904|gb|CB684179.1|CB684179
EST:     CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG                         GCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
genomic: CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
EST: gi|29679987|gb|CB676262.1|CB676262
EST:     CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG                         GCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
genomic: CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
EST: gi|88983468|gb|CI028695.1|CI028695
EST:     CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG                         GCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
genomic: CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
EST: gi|88980311|gb|CI026578.1|CI026578
EST:     CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG                         GCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
genomic: CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
EST: gi|55408699|gb|CV721075.1|CV721075
EST:     CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG                         GCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTNGCCATAGCT
genomic: CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATT-GCCATAGCT
EST: gi|29685328|gb|CB681603.1|CB681603
EST:     CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG                         GCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
genomic: CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
EST: gi|87040823|gb|CI195445.1|CI195445
EST:     CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG                         GCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
genomic: CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
EST: gi|29666541|gb|CB662816.1|CB662816
EST:     CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG                         GCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
genomic: CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
EST: gi|29671527|gb|CB667802.1|CB667802
EST:     CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG                         GCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
genomic: CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
EST: gi|84117005|gb|CD150772.1|CD150772
EST:     CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG                         GCAACAGAATTACCACACAGACTGGAATTGGTAC
genomic: CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTAC
EST: gi|86501723|gb|CI144356.1|CI144356
EST:     CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG                         GCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
genomic: CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
EST: gi|29616354|gb|CB621366.1|CB621366
EST:     CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG                         GCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
genomic: CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
EST: gi|29616223|gb|CB621235.1|CB621235
EST:     CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG                         GCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
genomic: CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
EST: gi|86528722|gb|CI168928.1|CI168928
EST:     GAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG                         GCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
genomic: GAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
EST: gi|88972974|gb|CI019593.1|CI019593
EST:     TTTCGTCATTGGATTCTCCATCATTGTTTTTG                         GCCACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
genomic: TTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
EST: gi|88214268|gb|CI214117.1|CI214117
EST:     TGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG                         GCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
genomic: TGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
EST: gi|58690439|gb|CK079126.1|CK079126
EST:     CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG                         GCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
genomic: CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
EST: gi|88987992|gb|CI018042.1|CI018042
EST:     CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG                         GCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
genomic: CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
EST: gi|29663112|gb|CB659387.1|CB659387
EST:     CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG                         GCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
genomic: CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
EST: gi|313084102|gb|HO213885.1|HO213885
EST:     CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG                         GCAACGGAATTACCACACAGACTGGAA
genomic: CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAA
EST: gi|29618840|gb|CB623852.1|CB623852
EST:     CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG                         GCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
genomic: CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
EST: gi|89169034|gb|CI020574.1|CI020574
EST:     CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG                         GCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
genomic: CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
EST: gi|88975808|gb|CI024059.1|CI024059
EST:     CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG                         GCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
genomic: CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
EST: gi|88971439|gb|CI017753.1|CI017753
EST:     CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG                         GCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
genomic: CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
EST: gi|29663772|gb|CB660047.1|CB660047
EST:     CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG                         GCAACAGAATTACCACACAGACTGGAATTGGTAGTTGCATTGCCATAGCTG
genomic: CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
EST: gi|88971431|gb|CI017745.1|CI017745
EST:     CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG                         GCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
genomic: CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
EST: gi|87016722|gb|CI275724.1|CI275724
EST:     CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG                         GCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
genomic: CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
EST: gi|29613763|gb|CB618776.1|CB618776
EST:     CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG                         GCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
genomic: CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
EST: gi|86831593|gb|CI301443.1|CI301443
EST:     CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG                         GCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
genomic: CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
EST: gi|87012744|gb|CI295188.1|CI295188
EST:     CATTGGATTCTCCATCATTGTTTTTG                         GCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
genomic: CATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
EST: gi|29658696|gb|CB654971.1|CB654971
EST:     CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG                         GCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
genomic: CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
EST: gi|29659419|gb|CB655694.1|CB655694
EST:     CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG                         GCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
genomic: CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
EST: gi|88994677|gb|CI036258.1|CI036258
EST:     CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG                         GCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
genomic: CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
EST: gi|44677263|gb|CR290697.1|CR290697
EST:     CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG                         GCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
genomic: CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
EST: gi|86840531|gb|CI333826.1|CI333826
EST:     CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG                         GCAACAGAATTACCACACAGACTGGAATTGGTACTTCCATTGCCATAGCTG
genomic: CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
EST: gi|86874333|gb|CI335945.1|CI335945
EST:     CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCACCATCATTGTTTTTG                         GCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
genomic: CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
EST: gi|88214214|gb|CI214063.1|CI214063
EST:     GAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG                         GCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
genomic: GAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
EST: gi|29662714|gb|CB658989.1|CB658989
EST:     CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG                         GCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
genomic: CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
EST: gi|86522230|gb|CI162436.1|CI162436
EST:     AAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG                         GCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
genomic: AAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
EST: gi|33797638|gb|CF324678.1|CF324678
EST:     AATGTGTT-AAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG                         GCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
genomic: AATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
EST: gi|29663111|gb|CB659386.1|CB659386
EST:     CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG                         GCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
genomic: CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
EST: gi|29671609|gb|CB667884.1|CB667884
EST:     CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG                         GCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
genomic: CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
EST: gi|86254987|gb|CI017107.1|CI017107
EST:     CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG                         GCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
genomic: CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
EST: gi|29685820|gb|CB682095.1|CB682095
EST:     CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG                         GCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
genomic: CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
EST: gi|88219350|gb|CI218910.1|CI218910
EST:     CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG                         GCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
genomic: CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
EST: gi|29685985|gb|CB682260.1|CB682260
EST:     CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG                         GCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
genomic: CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
EST: gi|86418717|gb|CI053518.1|CI053518
EST:     CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG                         GCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
genomic: CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
EST: gi|29660916|gb|CB657191.1|CB657191
EST:     CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG                         GCAACAGAATTACCCCCCAGACTGGAATTGGTACTTGCATTGCCATAGCTG
genomic: CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
EST: gi|88982620|gb|CI028035.1|CI028035
EST:     CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG                         GCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
genomic: CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
EST: gi|29657796|gb|CB654071.1|CB654071
EST:     CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG                         GCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
genomic: CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
EST: gi|29643944|gb|CB648951.1|CB648951
EST:     CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG                         GCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
genomic: CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
EST: gi|86525001|gb|CI165207.1|CI165207
EST:     CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG                         GCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
genomic: CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
EST: gi|86505322|gb|CI147955.1|CI147955
EST:     CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG                         GCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
genomic: CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
EST: gi|88983619|gb|CI028787.1|CI028787
EST:     CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG                         GCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
genomic: CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
EST: gi|25797136|gb|CA753097.1|CA753097
EST:     CAATGTGTTGAANAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG                         GCAACAGAATTACCACACAGACTGGAATTGGTAC
genomic: CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTAC
EST: gi|88971539|gb|CI017853.1|CI017853
EST:     CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG                         GCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
genomic: CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
EST: gi|88979266|gb|CI025768.1|CI025768
EST:     CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG                         GCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
genomic: CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
EST: gi|88844075|gb|CI001132.1|CI001132
EST:     CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG                         GCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
genomic: CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
EST: gi|88225172|gb|CI225088.1|CI225088
EST:     CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG                         GCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
genomic: CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
EST: gi|88217814|gb|CI217663.1|CI217663
EST:     CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG                         GCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
genomic: CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
EST: gi|29643945|gb|CB648952.1|CB648952
EST:     CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG                         GCAACAGAATTACCACACAGCCTGGAATTGGTACTTGCATTGCCATAGCTG
genomic: CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
EST: gi|29656095|gb|CB652370.1|CB652370
EST:     CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG                         GCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
genomic: CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
EST: gi|29683569|gb|CB679844.1|CB679844
EST:     CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG                         GCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
genomic: CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
EST: gi|86250525|gb|CI003643.1|CI003643
EST:     CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG                         GCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
genomic: CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
EST: gi|86854673|gb|CI258966.1|CI258966
EST:     CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG                         GCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
genomic: CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
EST: gi|29658105|gb|CB654380.1|CB654380
EST:     CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG                         GCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
genomic: CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
EST: gi|29655875|gb|CB652150.1|CB652150
EST:     CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG                         GCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
genomic: CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
EST: gi|86828588|gb|CI278677.1|CI278677
EST:     CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG                         GCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
genomic: CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
EST: gi|29636760|gb|CB641769.1|CB641769
EST:     CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG                         GCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
genomic: CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
EST: gi|86250673|gb|CI003791.1|CI003791
EST:     CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG                         GCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
genomic: CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
EST: gi|29642430|gb|CB647437.1|CB647437
EST:     CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG                         GCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
genomic: CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
EST: gi|29657882|gb|CB654157.1|CB654157
EST:     CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG                         GCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
genomic: CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTG
EST: gi|88342868|gb|CI640201.1|CI640201
EST:     CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG                         GCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGC
genomic: CAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 66 (upstream exon), 69 (downstream exon)
Score: 73

GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGCAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTGgtaagtaatt ... tgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTGGTGTTGCCATCTACTCGTACATCAAGGCTAAGATCGAAGAGGAGAAAAG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgtttgatgtgtttatgcctagcctaacacttggtaaatcatatgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTGGTGTTGCCATCTACTCGTACATCAAGGCTAAGATCGAAGAGGAGAAAAG
                       gcctaac  putative branch site (score: 73)
                                    taaatcatatgttaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagtaatttttcccccatgcctttacgaattgaaaattacaaatttgttatgttcgttgcattttttgtttgatgtgtttatgcctagcctaacacttggtaaatcatatgttaaacagGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTGGTGTTGCCATCTACTCGTACATCAAGGCTAAGATCGAAGAGGAGAAAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA