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gtaagtcagccagagattactttcactgtctttttctcttcaccatcaatagaacacctgttaactgaatgcatactgtcgcagGACCCATCATCTATCCCAGCTGTCTCAAAAAGAAAGCGCCAATTCCCTTTTGTCGACGAACCAGATGAATGAACCGGACAGTTGTGCGGCAGCAATCACT
species | Oryza sativa |
transcript | LOC_Os01g10340.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CTGCCAGCACTTCGACCTTGACAGGCGACTGATTGAATACCTATCTAGAT GACCCATCATCTATCCCAGCTTTCTCAAAAAGAAAGCGCCAATTCCCTTTTEST: gi|88374674|gb|CI518541.1|CI518541
genomic: CTGCCAGCACTTCGACCTTGACAGGCGACTGATTGAATACCTATCTAGATgtaagtcagc ... actgtcgcagGACCCATCATCTATCCCAGCTGTCTCAAAAAGAAAGCGCCAATTCCCTTTT
EST: CTGCCAGCACTTCGACCTTGACGGGCGACTGATTGAATACCTATTTAGAT GACCCATCATCTATCCCAGCTGTCTCAAAAAGAAAGCGCCAATTCCCTTTTEST: gi|14713541|gb|AU197539.1|AU197539
genomic: CTGCCAGCACTTCGACCTTGACAGGCGACTGATTGAATACCTATCTAGATgtaagtcagc ... actgtcgcagGACCCATCATCTATCCCAGCTGTCTCAAAAAGAAAGCGCCAATTCCCTTTT
EST: CTGCCAGCACTTCGACCTTGACAGGCGACTGATTGAATACCTATCTAGAT GACCCATCATCTATCCCAGCTGTCTCAAAAAGAAAGCGCCAATTCCCTTTTEST: gi|86845834|gb|CI347093.1|CI347093
genomic: CTGCCAGCACTTCGACCTTGACAGGCGACTGATTGAATACCTATCTAGATgtaagtcagc ... actgtcgcagGACCCATCATCTATCCCAGCTGTCTCAAAAAGAAAGCGCCAATTCCCTTTT
EST: CTGCCAGCACTTCGACCTTGACAGGCGACTGATTGAATACCTATCTAGAT GACCCATCATCTATCCCAGCTGTCTCAAAAAGAAAGCGCCAATTCCCTTTTEST: gi|572096|gb|D41607.1|D41607
genomic: CTGCCAGCACTTCGACCTTGACAGGCGACTGATTGAATACCTATCTAGATgtaagtcagc ... actgtcgcagGACCCATCATCTATCCCAGCTGTCTCAAAAAGAAAGCGCCAATTCCCTTTT
EST: CTGCCAGCACTTCGACCTTGACAGGCGACTGATTGAATACCTATCTAGAT GACCCATCATCTATCCCAGCTGTCTCAAAAAGAAAGCGCCAATTCCCTTTTEST: gi|88506530|gb|CI434036.1|CI434036
genomic: CTGCCAGCACTTCGACCTTGACAGGCGACTGATTGAATACCTATCTAGATgtaagtcagc ... actgtcgcagGACCCATCATCTATCCCAGCTGTCTCAAAAAGAAAGCGCCAATTCCCTTTT
EST: CTGCCAGCACTTCGACCTTGACAGGCGACTGATTGAATACCTATGTAGAT GACCCATCATCTATCCCAGCTGTCTCGAAAAGAAAGCGCCAATTCCCTTTTEST: gi|88513134|gb|CI440640.1|CI440640
genomic: CTGCCAGCACTTCGACCTTGACAGGCGACTGATTGAATACCTATCTAGATgtaagtcagc ... actgtcgcagGACCCATCATCTATCCCAGCTGTCTCAAAAAGAAAGCGCCAATTCCCTTTT
EST: CTGCCAGCACTTCGACCTTGACAGGCGACTGATTGAATACCTATCTAGAT GACCCATCATCTATCCCAGCTGTCTCAAAAAGAAAGCGCCCATTCCCTTTTEST: gi|571728|gb|D41239.1|D41239
genomic: CTGCCAGCACTTCGACCTTGACAGGCGACTGATTGAATACCTATCTAGATgtaagtcagc ... actgtcgcagGACCCATCATCTATCCCAGCTGTCTCAAAAAGAAAGCGCCAATTCCCTTTT
EST: CTGCCAGCACTTCGACCTTGACAGGCGACTGATTGANTACCTATCTAGAT GACCCATCATCTATCCCAGCTGTCTCAAAAAGAAAGCGCCAATTCCCTTTTEST: gi|570054|gb|D40903.1|D40903
genomic: CTGCCAGCACTTCGACCTTGACAGGCGACTGATTGAATACCTATCTAGATgtaagtcagc ... actgtcgcagGACCCATCATCTATCCCAGCTGTCTCAAAAAGAAAGCGCCAATTCCCTTTT
EST: CTGCCAGCACTTCGACCTTGACAGGCGACTGATTGAATACCTATCTAGAT GACCCATCATCTATCCCAGCTGTCTCAAAAAGAAAGCGCCAATTCCCTTTTEST: gi|86259409|gb|CI008086.1|CI008086
genomic: CTGCCAGCACTTCGACCTTGACAGGCGACTGATTGAATACCTATCTAGATgtaagtcagc ... actgtcgcagGACCCATCATCTATCCCAGCTGTCTCAAAAAGAAAGCGCCAATTCCCTTTT
EST: CTGCCAGCACTTCGACCTTGACAGGCGACTGATTGAATACCTATCTAGAT GACCCATCATCTATCCCAGCTGTCTCAAAAAGAAAGCGCCAATTCCCTTTTEST: gi|89178659|gb|CI391657.1|CI391657
genomic: CTGCCAGCACTTCGACCTTGACAGGCGACTGATTGAATACCTATCTAGATgtaagtcagc ... actgtcgcagGACCCATCATCTATCCCAGCTGTCTCAAAAAGAAAGCGCCAATTCCCTTTT
EST: CTGCCAGCACTTCGACCTTGACAGGCGACTGATTGAATACCTATCTAGAT GACCCATCATCTATCCCAGCTGTCTCAAAAAGAAAGCGCCAATTCCCTTTTEST: gi|88463250|gb|CI524560.1|CI524560
genomic: CTGCCAGCACTTCGACCTTGACAGGCGACTGATTGAATACCTATCTAGATgtaagtcagc ... actgtcgcagGACCCATCATCTATCCCAGCTGTCTCAAAAAGAAAGCGCCAATTCCCTTTT
EST: CTGCCAGCACTTCGACCTTGACAGGCGACTGATTGAATACCTATCTAGAT GACCCATCATCTATCCCAGCTGTCTCAAAAAGAAAGCGCCAATTCCCTTTTEST: gi|88304712|gb|CI520567.1|CI520567
genomic: CTGCCAGCACTTCGACCTTGACAGGCGACTGATTGAATACCTATCTAGATgtaagtcagc ... actgtcgcagGACCCATCATCTATCCCAGCTGTCTCAAAAAGAAAGCGCCAATTCCCTTTT
EST: GTGCCAGCACTTGGACCTTGACAGGCGACTGATTGGATACCTATGTAGAT GACCCATCATCTATCCCAGCTGTCTCGAAAAGAAAGCGCCAATTCCCTTTT
genomic: CTGCCAGCACTTCGACCTTGACAGGCGACTGATTGAATACCTATCTAGATgtaagtcagc ... actgtcgcagGACCCATCATCTATCCCAGCTGTCTCAAAAAGAAAGCGCCAATTCCCTTTT
ctttttctcttcaccatcaatagaacacctgttaactgaatgcatactgtcgcagGACCCATCATCTATCCCAGCTGTCTCAAAAAGAAAGCGCCAATTCCCTTTTGTCGACGAACCAGATGAATGAACCGGACAGTTGTGCGGCAGCAATCACT
tgttaac putative branch site (score: 1)
atcaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtcagccagagattactttcactgtctttttctcttcaccatcaatagaacacctgttaactgaatgcatactgtcgcagGACCCATCATCTATCCCAGCTGTCTCAAAAAGAAAGCGCCAATTCCCTTTTGTCGACGAACCAGATGAATGAACCGGACAGTTGTGCGGCAGCAATCACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG