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...caaagttggaatttgattatgtcgtaaaatatatgcaccctacatgttttagcttcatattgacttatattttcatatgtgctccttcaactgcacaaagCTGGAAGTTCCTGCATCTGAAGCCACTATTGATGCCACTGCGCAAGGCATTGCTTCCATGCTATGTGCTCATGGTCCCGATGTTGAGTGGAGAATATGTA
species | Oryza sativa |
transcript | LOC_Os01g08700.6 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AACTCCATCATGAGCCACTAGGTGGCTATGTATCATCGTACAAAAGGCAG CTGGAAGTTCCTGCATCTGAAGCCACTATTGATGCCACTGCGCAAGGCATTEST: gi|33675353|gb|CF303592.1|CF303592
genomic: AACTCCATCATGAGCCACTAGGTGGCTATGTATCATCGTACAAAAGGCAGgtatgcagtg ... ctgcacaaagCTGGAAGTTCCTGCATCTGAAGCCACTATTGATGCCACTGCGCAAGGCATT
EST: AACTCCATCATGAGCCACTAGGTGGCTATGTATCATCGTACAAAAGGCAG CTGGAAGTTCCTGCATCTGAAGCCACTATTGATGCCACTGCGCAAGGCATTEST: gi|58688253|gb|CK076940.1|CK076940
genomic: AACTCCATCATGAGCCACTAGGTGGCTATGTATCATCGTACAAAAGGCAGgtatgcagtg ... ctgcacaaagCTGGAAGTTCCTGCATCTGAAGCCACTATTGATGCCACTGCGCAAGGCATT
EST: AACTCCATCATGAGCCACTAGGTGGCTATGTATCATCGTACAAAAGGCAG CTGGAAGTTCCTGCATCTGAAGCCACTATTGATGCCACTGCGCAAGGCATTEST: gi|58688764|gb|CK077451.1|CK077451
genomic: AACTCCATCATGAGCCACTAGGTGGCTATGTATCATCGTACAAAAGGCAGgtatgcagtg ... ctgcacaaagCTGGAAGTTCCTGCATCTGAAGCCACTATTGATGCCACTGCGCAAGGCATT
EST: AACTCCATCATGAGCCACTAGGTGGCTATGTATCATCGTACAAAAGGCAG CTGGAAGTTCCTGCATCTGAAGCCACTATTGATGCCACTGCGCAAGGCATTEST: gi|29631643|gb|CB636652.1|CB636652
genomic: AACTCCATCATGAGCCACTAGGTGGCTATGTATCATCGTACAAAAGGCAGgtatgcagtg ... ctgcacaaagCTGGAAGTTCCTGCATCTGAAGCCACTATTGATGCCACTGCGCAAGGCATT
EST: AACTCCATCATGAGCTACTAGGTGGCTATGTATCATCGTACAAAAGGCAG CTGGAAGTTCCTGCATCTGAAGCCACTATTGATGCCACTGCGCAAGGCATTEST: gi|29678221|gb|CB674496.1|CB674496
genomic: AACTCCATCATGAGCCACTAGGTGGCTATGTATCATCGTACAAAAGGCAGgtatgcagtg ... ctgcacaaagCTGGAAGTTCCTGCATCTGAAGCCACTATTGATGCCACTGCGCAAGGCATT
EST: AACTCCATCATGAGCCACTAGGTGGCTATGTATCATCGTACAAAAGGCAG CTGGAAGTTCCTGCATCTGAAGCCACTATTGATGCCACTGCGCAAGGCATTEST: gi|33676336|gb|CF304575.1|CF304575
genomic: AACTCCATCATGAGCCACTAGGTGGCTATGTATCATCGTACAAAAGGCAGgtatgcagtg ... ctgcacaaagCTGGAAGTTCCTGCATCTGAAGCCACTATTGATGCCACTGCGCAAGGCATT
EST: AACTCCATCATGAGCCACTAGGTGGCTATGTATCATCGTACAAAAGGCAG CTGGAAGTTCCTGCATCTGAAGCCACTATTGATGCCACTGCGCAAGGCATTEST: gi|58687558|gb|CK076245.1|CK076245
genomic: AACTCCATCATGAGCCACTAGGTGGCTATGTATCATCGTACAAAAGGCAGgtatgcagtg ... ctgcacaaagCTGGAAGTTCCTGCATCTGAAGCCACTATTGATGCCACTGCGCAAGGCATT
EST: AACTCCATCATGAGCCACTAGGTGGCTATGTATCATCGTACAAAAGGCAG CTGGAAGTTCCTGCATCTGAAGCCACTATTGATGCCACEST: gi|29635195|gb|CB640204.1|CB640204
genomic: AACTCCATCATGAGCCACTAGGTGGCTATGTATCATCGTACAAAAGGCAGgtatgcagtg ... ctgcacaaagCTGGAAGTTCCTGCATCTGAAGCCACTATTGATGCCAC
EST: AACTCCATCATGAGCCACTAGGTGGCTATGTATCATCGTACAAAAGGCAG CTGGAAGTTCCTGCATCTGAAGCCACTATTGATGCCACTGCGCAAGGCATTEST: gi|29662456|gb|CB658731.1|CB658731
genomic: AACTCCATCATGAGCCACTAGGTGGCTATGTATCATCGTACAAAAGGCAGgtatgcagtg ... ctgcacaaagCTGGAAGTTCCTGCATCTGAAGCCACTATTGATGCCACTGCGCAAGGCATT
EST: AACTCCATCATGAGCCACTAGGTGGCTATGTATCATCGTACAAAAGGCAG CTGGAAGTTCCTGCATCTGAAGCCACTATTGATGCCACTGCGCAAGGCATTEST: gi|58606034|gb|CK034067.1|CK034067
genomic: AACTCCATCATGAGCCACTAGGTGGCTATGTATCATCGTACAAAAGGCAGgtatgcagtg ... ctgcacaaagCTGGAAGTTCCTGCATCTGAAGCCACTATTGATGCCACTGCGCAAGGCATT
EST: AACTCCATCATGAGCCACTAGGTGGCTATGTATCATCGTACAAAAGGCAG CTGGAAGTTCCTGCATCTGAAGCCACTATTGATGCCACTGCGCAAGGCATTEST: gi|29683422|gb|CB679697.1|CB679697
genomic: AACTCCATCATGAGCCACTAGGTGGCTATGTATCATCGTACAAAAGGCAGgtatgcagtg ... ctgcacaaagCTGGAAGTTCCTGCATCTGAAGCCACTATTGATGCCACTGCGCAAGGCATT
EST: AACTCCATCATGAGCCACTAGGTGGCTATGTATCATCGTACAAAAGGCAG CTGGAAGTTCCTGCATCTGAAGCCACTATTGATGCCACTGCGCAAGGCATTEST: gi|29664618|gb|CB660893.1|CB660893
genomic: AACTCCATCATGAGCCACTAGGTGGCTATGTATCATCGTACAAAAGGCAGgtatgcagtg ... ctgcacaaagCTGGAAGTTCCTGCATCTGAAGCCACTATTGATGCCACTGCGCAAGGCATT
EST: AACTCCATCATGAGCCACTAGGTGGCTATGTATCATCGTACAAAAGGCAG CTGGAAGTTCCTGCATCTGAAGCCACTATTGATGCCACTGCGCAAGGCATTEST: gi|58605455|gb|CK033488.1|CK033488
genomic: AACTCCATCATGAGCCACTAGGTGGCTATGTATCATCGTACAAAAGGCAGgtatgcagtg ... ctgcacaaagCTGGAAGTTCCTGCATCTGAAGCCACTATTGATGCCACTGCGCAAGGCATT
EST: AACTCCATCATGAGCCACTAGGTGGCTATGTATCATCGTACAAAAGGCAG CTGGAAGTTCCTGCATCTGAAGCCACTATTGATGCCACTGCGCAAGGCATTEST: gi|29657250|gb|CB653525.1|CB653525
genomic: AACTCCATCATGAGCCACTAGGTGGCTATGTATCATCGTACAAAAGGCAGgtatgcagtg ... ctgcacaaagCTGGAAGTTCCTGCATCTGAAGCCACTATTGATGCCACTGCGCAAGGCATT
EST: AACTCCATCATGAGCCACTAGGTGGCTATGTATCATCGTACAAAAGGCAG CTGGAAGTTCCTGCATCTGAAGCCACTATTGATGCCACTGCGCAAGGCATTEST: gi|33799165|gb|CF325440.1|CF325440
genomic: AACTCCATCATGAGCCACTAGGTGGCTATGTATCATCGTACAAAAGGCAGgtatgcagtg ... ctgcacaaagCTGGAAGTTCCTGCATCTGAAGCCACTATTGATGCCACTGCGCAAGGCATT
EST: AACTCCATCATGAGCCACTAGGTGGCTATGTATCATCGTACAAAAGGCAG CTGGAAGTTCCTGCATCTGAAGCCACTATTGATGCCACTGCGCAAGGCATTEST: gi|33801382|gb|CF326562.1|CF326562
genomic: AACTCCATCATGAGCCACTAGGTGGCTATGTATCATCGTACAAAAGGCAGgtatgcagtg ... ctgcacaaagCTGGAAGTTCCTGCATCTGAAGCCACTATTGATGCCACTGCGCAAGGCATT
EST: AACTCCATCATGAGCCACTAGGTGGCTATGTATCATCGTACAAAAGGCAG CTGGAAGTTCCTGCATCTGAAGCCACTATTGATGCCACTGCGCAAGGCATTEST: gi|33798134|gb|CF324927.1|CF324927
genomic: AACTCCATCATGAGCCACTAGGTGGCTATGTATCATCGTACAAAAGGCAGgtatgcagtg ... ctgcacaaagCTGGAAGTTCCTGCATCTGAAGCCACTATTGATGCCACTGCGCAAGGCATT
EST: AACTCCATCATGAGCCACTAGGTGGCTATGTATCATCGTACAAAAGGCAG CTGGAAGTTCCTGCATCTGAAGCCACTATTGATGCCACTGCGCAAGGCATTEST: gi|29623544|gb|CB628555.1|CB628555
genomic: AACTCCATCATGAGCCACTAGGTGGCTATGTATCATCGTACAAAAGGCAGgtatgcagtg ... ctgcacaaagCTGGAAGTTCCTGCATCTGAAGCCACTATTGATGCCACTGCGCAAGGCATT
EST: AACTCCATCATGAGCCACTAGGTGGCTATGTATCATCGTACAAAAGGCAG CTGGAAGTTCCTGCATCTGAAGCCACTATTGATGCCACTGCGCAAGGCATTEST: gi|29658233|gb|CB654508.1|CB654508
genomic: AACTCCATCATGAGCCACTAGGTGGCTATGTATCATCGTACAAAAGGCAGgtatgcagtg ... ctgcacaaagCTGGAAGTTCCTGCATCTGAAGCCACTATTGATGCCACTGCGCAAGGCATT
EST: AACTCCATCATGAGCCACTAGGTGGCTATGTATCATCGTACAAAAGGCAG CTGGAAGTTCCTGCATCTGAAGCCACTATTGATGCCACTGCGCAAGGCATTEST: gi|58695779|gb|CK084466.1|CK084466
genomic: AACTCCATCATGAGCCACTAGGTGGCTATGTATCATCGTACAAAAGGCAGgtatgcagtg ... ctgcacaaagCTGGAAGTTCCTGCATCTGAAGCCACTATTGATGCCACTGCGCAAGGCATT
EST: AACTCCATCATGAGCCACTAGGTGGCTATGTATCATCGTACAAAAGGCAG CTGGAAGTTCCTGCATCTGAAGCCACTATTGATGCCACTGCGCAAGGCATT
genomic: AACTCCATCATGAGCCACTAGGTGGCTATGTATCATCGTACAAAAGGCAGgtatgcagtg ... ctgcacaaagCTGGAAGTTCCTGCATCTGAAGCCACTATTGATGCCACTGCGCAAGGCATT
gttttagcttcatattgacttatattttcatatgtgctccttcaactgcacaaagCTGGAAGTTCCTGCATCTGAAGCCACTATTGATGCCACTGCGCAAGGCATTGCTTCCATGCTATGTGCTCATGGTCCCGATGTTGAGTGGAGAATATGTA
tattgac putative branch site (score: 2)
atattgacttatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaagttggaatttgattatgtcgtaaaatatatgcaccctacatgttttagcttcatattgacttatattttcatatgtgctccttcaactgcacaaagCTGGAAGTTCCTGCATCTGAAGCCACTATTGATGCCACTGCGCAAGGCATTGCTTCCATGCTATGTGCTCATGGTCCCGATGTTGAGTGGAGAATATGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA