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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtatcagttcctatttgaatcctgcctttgagcttaattagcaccgacatgatgaattatctatgcagCTTCCATAACAGCAACAGTGGCAATCAGTTTGGCGATACTTCTGGCTTCCAAACCAG

Basic information

species Oryza sativa
transcript LOC_Os01g07740.2
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29681553|gb|CB677828.1|CB677828
EST:     AACAGTGGTTATGGCAGTCAGTCTGGGAATGGTTCTAGCTTTCATAGTAG                         CTTCCATAACAGCAACAGTGGCAATCAGTTTGGCGATACTTCTGGCTTCCA
genomic: AACAGTGGTTATGGCAGTCAGTCTGGGAATGGTTCTAGCTTTCATAGTAGgtatgtatca ... atctatgcagCTTCCATAACAGCAACAGTGGCAATCAGTTTGGCGATACTTCTGGCTTCCA
EST: gi|163920524|gb|EG709580.1|EG709580
EST:     AACAGTGGTTATGGCAGTCAGTCTGGGAATGGTTCTAGCTTTCATAGTAG                         CTTCCATAACAGCAACAGTGGCAATCAGTTTGGCGATACTTCTGGCTTCCA
genomic: AACAGTGGTTATGGCAGTCAGTCTGGGAATGGTTCTAGCTTTCATAGTAGgtatgtatca ... atctatgcagCTTCCATAACAGCAACAGTGGCAATCAGTTTGGCGATACTTCTGGCTTCCA
EST: gi|86437266|gb|CI118988.1|CI118988
EST:     CTTTCATAGTAG                         CTTCCATAACAGCAACAGTGGCAATCAGTCTGGCGATACTTCTGGCTTCCA
genomic: CTTTCATAGTAGgtatgtatca ... atctatgcagCTTCCATAACAGCAACAGTGGCAATCAGTTTGGCGATACTTCTGGCTTCCA
EST: gi|163929260|gb|EG711021.1|EG711021
EST:     ATCAGTGGTTATGGCAGTCAGTCTGGGAATGGTTCTAGCTTTCATAGTAG                         CTTCCATAACAGCAACAGTGGCAATCAGTTTGGCGATACTTCTGGCTTCCA
genomic: AACAGTGGTTATGGCAGTCAGTCTGGGAATGGTTCTAGCTTTCATAGTAGgtatgtatca ... atctatgcagCTTCCATAACAGCAACAGTGGCAATCAGTTTGGCGATACTTCTGGCTTCCA
EST: gi|66913147|gb|CX099995.1|CX099995
EST:     AACAGTGGTTATGGCAGTCAGTCTGGGAATGGTTCTAGCTTTCATAGTAG                         CTTCCATAACAGCAACAGTGGCAATCAGTTTGGCGATACTTCTGGCTTCCA
genomic: AACAGTGGTTATGGCAGTCAGTCTGGGAATGGTTCTAGCTTTCATAGTAGgtatgtatca ... atctatgcagCTTCCATAACAGCAACAGTGGCAATCAGTTTGGCGATACTTCTGGCTTCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgaatcctgcctttgagcttaattagcaccgacatgatgaattatctatgcagCTTCCATAACAGCAACAGTGGCAATCAGTTTGGCGATACTTCTGGCTTCCAAACCAG
                  gcttaat  putative branch site (score: 4)
                                         aattatctat  TA-rich tract