1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaagttttgtctttacacttccgtttctggtattaaatatttgatgatatcaacagttctattgctttctatcccgcaaatgccaatctctgaattatcctttccttgtttggttcagGAAGTTAAAATGATGTTACCTCACACACAAAGAGGGCGGGCTGGATTTTCATTGGAACACAATGTGGTTGATTTGATGGAGAAACTGGGGTTGGCTATAC
species | Oryza sativa |
transcript | LOC_Os01g05530.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TACTTGCGTGCCATTCAAAAAAGTTTGGAACCATACATGAAGTCAAGAAA GAAGTTAAAATGATGTTACCTCACACACAAAGAGGGCGGGCTGGATTTTCAEST: gi|86872002|gb|CI332174.1|CI332174
genomic: TACTTGCGTGCCATTCAAAAAAGTTTGGAACCATACATGAAGTCAAGAAAgtaagttttg ... tttggttcagGAAGTTAAAATGATGTTACCTCACACACAAAGAGGGCGGGCTGGATTTTCA
EST: GTGCCATTCAAAAAAGTTTGGAACCATACATGAAGTCAAGAAA GAAGTTAAAATGATGTTACCTCACACACAAAGAGGGCGGGCTGGATTTTCAEST: gi|89185066|gb|CI049612.1|CI049612
genomic: GTGCCATTCAAAAAAGTTTGGAACCATACATGAAGTCAAGAAAgtaagttttg ... tttggttcagGAAGTTAAAATGATGTTACCTCACACACAAAGAGGGCGGGCTGGATTTTCA
EST: TACTTGCGTGCCATTCAAAAAAGTTTGGAACCATACATGAAGTCAAGAAA GAAGTTAAAATGATGTTACCTCACACACAAAGAGGGCGGGCTGGATTTTCAEST: gi|29628348|gb|CB633359.1|CB633359
genomic: TACTTGCGTGCCATTCAAAAAAGTTTGGAACCATACATGAAGTCAAGAAAgtaagttttg ... tttggttcagGAAGTTAAAATGATGTTACCTCACACACAAAGAGGGCGGGCTGGATTTTCA
EST: TACTTGCGTGCCATTCAAAAAAGTTTGGAACCATACATGAAGTCAAAAAA GAAGTTAAAATGATGTTACCTCACACACAAAGAGGCCGGGCTGGATTTTCAEST: gi|88292005|gb|CI532597.1|CI532597
genomic: TACTTGCGTGCCATTCAAAAAAGTTTGGAACCATACATGAAGTCAAGAAAgtaagttttg ... tttggttcagGAAGTTAAAATGATGTTACCTCACACACAAAGAGGGCGGGCTGGATTTTCA
EST: TACTTGCGTGCCATTCAAAAAAGTTTGGAACCATACATGAAGTCAAGAAA GAAGTTAAAATGATGTTACCTCACACACAAAGAGGGCGGGCTGGATTTTCAEST: gi|89177341|gb|CI250790.1|CI250790
genomic: TACTTGCGTGCCATTCAAAAAAGTTTGGAACCATACATGAAGTCAAGAAAgtaagttttg ... tttggttcagGAAGTTAAAATGATGTTACCTCACACACAAAGAGGGCGGGCTGGATTTTCA
EST: TACTTGCGTGCCATTCAAAAAAGTTTGGAACCATACATGAAGTCAAGAAA GAAGTTAAAATGATGTTACCTCACACACAAAGAGGGCGGGCTGGATTTTCAEST: gi|88223189|gb|CI223038.1|CI223038
genomic: TACTTGCGTGCCATTCAAAAAAGTTTGGAACCATACATGAAGTCAAGAAAgtaagttttg ... tttggttcagGAAGTTAAAATGATGTTACCTCACACACAAAGAGGGCGGGCTGGATTTTCA
EST: TACTTGCGTGCCATTCAAAAAAGTTTGGAACCATACATGAAGTCAAGAAA GAAGTTAAAATGATGTTACCTCACACACAAAGAGGGCGGGCTGGATTTTCA
genomic: TACTTGCGTGCCATTCAAAAAAGTTTGGAACCATACATGAAGTCAAGAAAgtaagttttg ... tttggttcagGAAGTTAAAATGATGTTACCTCACACACAAAGAGGGCGGGCTGGATTTTCA
gctttctatcccgcaaatgccaatctctgaattatcctttccttgtttggttcagGAAGTTAAAATGATGTTACCTCACACACAAAGAGGGCGGGCTGGATTTTCATTGGAACACAATGTGGTTGATTTGATGGAGAAACTGGGGTTGGCTATAC
ttatcctttccttgtt CT-rich tract
tgaattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttttgtctttacacttccgtttctggtattaaatatttgatgatatcaacagttctattgctttctatcccgcaaatgccaatctctgaattatcctttccttgtttggttcagGAAGTTAAAATGATGTTACCTCACACACAAAGAGGGCGGGCTGGATTTTCATTGGAACACAATGTGGTTGATTTGATGGAGAAACTGGGGTTGGCTATAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA