1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...atttgccaaatatattgtcttttccccaaatacatgccatccaagttggctagtttgcactcggtgctgatgtgggctaactgttgtgttgtgtcgacagGCTTTTTTGATGTGAAATATTTCTGGAGCTGTCAACGAGACCTGAGACCCACGTGTAATTTTCCAATGAGAACAAAATGCTTTGTCACCCGAAGCCTAAT
species | Oryza sativa |
transcript | LOC_Os01g05510.5 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TACAGTTACCTACTGTGGCGATTCTCGGTGATGGACCTATCTGGTGCAAG GCTTTTTTGATGTGAAATATTTCTGGAGCTGTCAACGAGACCTGAGACCCAEST: gi|88843164|gb|CI372064.1|CI372064
genomic: TACAGTTACCTACTGTGGCGATTCTCGGTGATGGACCTATCTGGTGCAAGgtaacctacg ... gtgtcgacagGCTTTTTTGATGTGAAATATTTCTGGAGCTGTCAACGAGACCTGAGACCCA
EST: TACAGTTACCTACTGTGGCGATTCTCGGTGAT-GACCTATCTGGTGC-AG GCTTTTTTGATGTGAAATATTTCTGGAGCTGTCAACGAGACCTGAGACCCAEST: gi|86873537|gb|CI329915.1|CI329915
genomic: TACAGTTACCTACTGTGGCGATTCTCGGTGATGGACCTATCTGGTGCAAGgtaacctacg ... gtgtcgacagGCTTTTTTGATGTGAAATATTTCTGGAGCTGTCAACGAGACCTGAGACCCA
EST: TACAGTTACCTACTGTGGCGATTCTCGGTGATGGACCTATCTGGTGCAAG GCTTTTTTGATGTGAAATATTTCTGGAGCTGTCAACGAGACCTGAGACCCAEST: gi|89182986|gb|CI003050.1|CI003050
genomic: TACAGTTACCTACTGTGGCGATTCTCGGTGATGGACCTATCTGGTGCAAGgtaacctacg ... gtgtcgacagGCTTTTTTGATGTGAAATATTTCTGGAGCTGTCAACGAGACCTGAGACCCA
EST: TACAGTTACCTACTGTGGCGATTCTCGGTGATGGACCTATCTGGTGCAAG GCTTTTTTGATGTGAAATATTTCTGGAGCTGTCAACGAGACCTGAGACCCAEST: gi|86479352|gb|CI121985.1|CI121985
genomic: TACAGTTACCTACTGTGGCGATTCTCGGTGATGGACCTATCTGGTGCAAGgtaacctacg ... gtgtcgacagGCTTTTTTGATGTGAAATATTTCTGGAGCTGTCAACGAGACCTGAGACCCA
EST: TACAGTTACCTACTGTGGCGATTCTCGGTGATGGACCTATCTGGTGCAAG GCTTTTTTGATGTGAAATATTTCTGGAGCTGTCAACGAGACCTGAGACCCA
genomic: TACAGTTACCTACTGTGGCGATTCTCGGTGATGGACCTATCTGGTGCAAGgtaacctacg ... gtgtcgacagGCTTTTTTGATGTGAAATATTTCTGGAGCTGTCAACGAGACCTGAGACCCA
ttggctagtttgcactcggtgctgatgtgggctaactgttgtgttgtgtcgacagGCTTTTTTGATGTGAAATATTTCTGGAGCTGTCAACGAGACCTGAGACCCACGTGTAATTTTCCAATGAGAACAAAATGCTTTGTCACCCGAAGCCTAAT
ggctaac putative branch site (score: 2)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttgccaaatatattgtcttttccccaaatacatgccatccaagttggctagtttgcactcggtgctgatgtgggctaactgttgtgttgtgtcgacagGCTTTTTTGATGTGAAATATTTCTGGAGCTGTCAACGAGACCTGAGACCCACGTGTAATTTTCCAATGAGAACAAAATGCTTTGTCACCCGAAGCCTAAT
- - - - - - - - - - - - - - - tacatgc
- - - - - - - - - - - - - - - - - - -catccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - gtttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgttgt