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gttagtccatgcttagaaagtattctagaatcaattttgaaatggcctttctgatggtatatatatttctgatagGTACAATGATTGCATCTTCTCTGATGGACAAGCAAGGAAGGAAGAGCCTTCTGATAACAAGCTTTTCTGGCATG
species | Oryza sativa |
transcript | LOC_Os01g04190.3 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TGCATCTGATGTTGCAGCGAGTGCCCTTGTTGGAGCAGCCAATGTTTTTG GTACAATGATTGCATCTTCTCTGATGGACAAGCAAGGAAGGAAGAGCCTTCEST: gi|163921085|gb|EG710424.1|EG710424
genomic: TGCATCTGATGTTGCAGCGAGTGCCCTTGTTGGAGCAGCCAATGTTTTTGgttagtccat ... tttctgatagGTACAATGATTGCATCTTCTCTGATGGACAAGCAAGGAAGGAAGAGCCTTC
EST: TGCATCTGATGTTGCAGCGAGTGCCCTTGTTGGAGCAGCCAATGTTTTTG GTACAATGATTGCATCTTCTCTGATGGACAAGCAAGGAAGGAAGAGCCTTCEST: gi|38481055|gb|CF965144.1|CF965144
genomic: TGCATCTGATGTTGCAGCGAGTGCCCTTGTTGGAGCAGCCAATGTTTTTGgttagtccat ... tttctgatagGTACAATGATTGCATCTTCTCTGATGGACAAGCAAGGAAGGAAGAGCCTTC
EST: TGCATCTGATGTTGCAGCGAGTGCCCTTGTTGGAGCAGCCAATGTTTTTG GTACAATGATTGCATCTTCTCTGATGGACAAGCAAGGAAGGAAGAGCCTTCEST: gi|7219969|gb|AU065196.2|AU065196
genomic: TGCATCTGATGTTGCAGCGAGTGCCCTTGTTGGAGCAGCCAATGTTTTTGgttagtccat ... tttctgatagGTACAATGATTGCATCTTCTCTGATGGACAAGCAAGGAAGGAAGAGCCTTC
EST: GCATCTGAATGTTGCAGCGAGTGCCCTTGTTGGAGCAGCCAATGTTTTTG GTACAATGATTGCATCTTCTCTGATGGACAAGCAANGAAGGAANAGCCTTCEST: gi|58598313|gb|CK008841.1|CK008841
genomic: GCATCTGA-TGTTGCAGCGAGTGCCCTTGTTGGAGCAGCCAATGTTTTTGgttagtccat ... tttctgatagGTACAATGATTGCATCTTCTCTGATGGACAAGCAAGGAAGGAAGAGCCTTC
EST: TGCATCTGATGTTGCAGCGAGTGCCCTTGTTGGAGCAGCCAATGTTTTTG GTACAATGATTGCATCTTCTCTGATGGACAAGCAAGGAAGGAAGAGCCTTCEST: gi|55409376|gb|CV721752.1|CV721752
genomic: TGCATCTGATGTTGCAGCGAGTGCCCTTGTTGGAGCAGCCAATGTTTTTGgttagtccat ... tttctgatagGTACAATGATTGCATCTTCTCTGATGGACAAGCAAGGAAGGAAGAGCCTTC
EST: TGCATCTGATGTTGCAGCGAGTGCCCTTGTTGGAGCAGCCAATGTTTTTG GTACAATGATTGCATCTTCTCTGATGGACAAGCAAGGAAGGAAGAGCCTTCEST: gi|27554385|gb|CA998285.1|CA998285
genomic: TGCATCTGATGTTGCAGCGAGTGCCCTTGTTGGAGCAGCCAATGTTTTTGgttagtccat ... tttctgatagGTACAATGATTGCATCTTCTCTGATGGACAAGCAAGGAAGGAAGAGCCTTC
EST: TGCATCTGATGTTGCAGCGAGTGCCCTTGTTGGAGCAGCCAATGTTTTTG GTACAATGATTGCATCTTCTCTGATGGACAAGCAAGGAAGGAAGAGCCTTCEST: gi|27576947|gb|CA999641.1|CA999641
genomic: TGCATCTGATGTTGCAGCGAGTGCCCTTGTTGGAGCAGCCAATGTTTTTGgttagtccat ... tttctgatagGTACAATGATTGCATCTTCTCTGATGGACAAGCAAGGAAGGAAGAGCCTTC
EST: TGCATCTGATGTTGCAGCGAGTGCCCTTGTTGGAGCAGCCAATGTTTTTG GTACAATGATTGCATCTTCTCTGATGGACAAGCAAGGAAGGAAGAGCCTTC
genomic: TGCATCTGATGTTGCAGCGAGTGCCCTTGTTGGAGCAGCCAATGTTTTTGgttagtccat ... tttctgatagGTACAATGATTGCATCTTCTCTGATGGACAAGCAAGGAAGGAAGAGCCTTC
tattctagaatcaattttgaaatggcctttctgatggtatatatatttctgatagGTACAATGATTGCATCTTCTCTGATGGACAAGCAAGGAAGGAAGAGCCTTCTGATAACAAGCTTTTCTGGCATG
ttctgat putative branch site (score: 3)
tatttct putative PPT
tatatatatttctgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtccatgcttagaaagtattctagaatcaattttgaaatggcctttctgatggtatatatatttctgatagGTACAATGATTGCATCTTCTCTGATGGACAAGCAAGGAAGGAAGAGCCTTCTGATAACAAGCTTTTCTGGCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT