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...aactacttatgtgtcatggtaccctttgttgctccatagctgtagtttttagtaaaataaatacgttttgagttctaattgatcttttatccatctttagATTGGCGCTGACATCTTCAAACAGGCTTTGAGTTACCCTACTGCATTGATTGCAAACAATGCTGGGGTGAACGGCAGCTTCGTCATAGAAAAG
species | Oryza sativa |
transcript | 13113.m00214 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CCATGAAGATTGATAGAATTAAGGAATCATTGGATAATATGGAGCAGAAG ATTGGTGCTGACATCTTCAAACAGGCTTTGAGTTACCCTACTGCATTGATTEST: gi|58688418|gb|CK077105.1|CK077105
genomic: CCATGAAGATTGATAGAATTAAGGAATCATTGGATAATATGGAGCAGAAGgtatatatgt ... ccatctttagATTGGCGCTGACATCTTCAAACAGGCTTTGAGTTACCCTACTGCATTGATT
EST: CCATGAAGATNGATAGAATTAAGGAATCATTGGATAATATGGAGCAGAAG ATTGGCGCTGACATCTTCAAAACAGGCTTTGAGTTACCCTACTGCATTGATEST: gi|29638632|gb|CB643641.1|CB643641
genomic: CCATGAAGATTGATAGAATTAAGGAATCATTGGATAATATGGAGCAGAAGgtatatatgt ... ccatctttagATTGGCGCTGACATCTTCAAA-CAGGCTTTGAGTTACCCTACTGCATTGAT
EST: CCATGAAGATTGATAGAATTAAGGAATCATTGGATAATATGGAGCAGAAG ATTGGCGCTGACATCEST: gi|58693979|gb|CK082666.1|CK082666
genomic: CCATGAAGATTGATAGAATTAAGGAATCATTGGATAATATGGAGCAGAAGgtatatatgt ... ccatctttagATTGGCGCTGACATC
EST: CCATGAAGATTGATAGAATTAAGGAATCATTGGATAATATGGAGCAGAAG ATTGGTGCTGACATCTTCAAACAGGCTTTGAGTTACCCTACTGCATTGATTEST: gi|33681193|gb|CF309432.1|CF309432
genomic: CCATGAAGATTGATAGAATTAAGGAATCATTGGATAATATGGAGCAGAAGgtatatatgt ... ccatctttagATTGGCGCTGACATCTTCAAACAGGCTTTGAGTTACCCTACTGCATTGATT
EST: CCATGAAGATTGATAGAATTAAGGAATCATTGGATAATATGGAGCAGAAG ATTGGCGCTGACATCTTCAAACAGGCTTTGAGTTACCCTACTGCATTGATTEST: gi|33681075|gb|CF309314.1|CF309314
genomic: CCATGAAGATTGATAGAATTAAGGAATCATTGGATAATATGGAGCAGAAGgtatatatgt ... ccatctttagATTGGCGCTGACATCTTCAAACAGGCTTTGAGTTACCCTACTGCATTGATT
EST: CCATGAAGATTGATAGAATTAAGGAATCATTGGATAATATGGAGCAGAAG ATTGGCGCTGACATCTTCAAACAGGCTTTGAGTTACCCTACTGCATTGATTEST: gi|84117216|gb|CD150983.1|CD150983
genomic: CCATGAAGATTGATAGAATTAAGGAATCATTGGATAATATGGAGCAGAAGgtatatatgt ... ccatctttagATTGGCGCTGACATCTTCAAACAGGCTTTGAGTTACCCTACTGCATTGATT
EST: CCATGAAGATTGATAGAATTAAGGAATCATTGGATAATATGGAGCAGAAG ATTGGCGCTGACATCTTCAAACAGGCTTTGAGTTACCCTACTGCATTGATTEST: gi|58689718|gb|CK078405.1|CK078405
genomic: CCATGAAGATTGATAGAATTAAGGAATCATTGGATAATATGGAGCAGAAGgtatatatgt ... ccatctttagATTGGCGCTGACATCTTCAAACAGGCTTTGAGTTACCCTACTGCATTGATT
EST: CCATGAAGATTGATAGAATTAAGGAATCATTGGATAATATGGAGCAGAAG ATTGGCGCTGACATCTTCAAACAGGCTTTGAGTTACCCTACTGCATTGATT
genomic: CCATGAAGATTGATAGAATTAAGGAATCATTGGATAATATGGAGCAGAAGgtatatatgt ... ccatctttagATTGGCGCTGACATCTTCAAACAGGCTTTGAGTTACCCTACTGCATTGATT
tttttagtaaaataaatacgttttgagttctaattgatcttttatccatctttagATTGGCGCTGACATCTTCAAACAGGCTTTGAGTTACCCTACTGCATTGATTGCAAACAATGCTGGGGTGAACGGCAGCTTCGTCATAGAAAAG
tcttttatccatcttt CT-rich tract
taaaataaatacgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aactacttatgtgtcatggtaccctttgttgctccatagctgtagtttttagtaaaataaatacgttttgagttctaattgatcttttatccatctttagATTGGCGCTGACATCTTCAAACAGGCTTTGAGTTACCCTACTGCATTGATTGCAAACAATGCTGGGGTGAACGGCAGCTTCGTCATAGAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - -tgtcatg
- - - - - - - - - - - - - tgttgct
- - - - - - - - - - - - - - - - - - - gctgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - aaataaa