1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttggagttttctctttggctctactctctaaaaatctagctatgaaaaagaatttgtttagactgacaaacaggctgctaagtaagttcatctcttgcagATTTTGATTGGTAGCTGTGTTCGTAGCAATAACAGCCTGGCAGAGAATCTTTGAGAAGTTGCAGTCTATTAGTTCAACAAG
species | Oryza sativa |
transcript | LOC_Os12g43950.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGCAGTTCCTGTTGCCTTTGCCCTGCGCCCCATCAGGAGCACACCCTCAG ATTTTGATTGGTATCTGTGTTCGTAGCAATAAAAGCCTGGCATAGAATCTTEST: gi|428262|gb|D24410.1|D24410
genomic: TGCAGTTCCTGTTGCCTTTGCCCTGCGCCCCATCAGGAGCACACCCTCAGgtctctcctc ... tctcttgcagATTTTGATTGGTAGCTGTGTTCGTAGCAATAACAGCCTGGCAGAGAATCTT
EST: GTTCCTGTTGCCTTTGCCCTGCGCCCCATCAGGAGCACACCCTCAG ATTTTGATTGGTAGCTGTGTTCGTAGCAATAACAGCCTGGCAGAGAATCTTEST: gi|88725163|gb|CI748422.1|CI748422
genomic: GTTCCTGTTGCCTTTGCCCTGCGCCCCATCAGGAGCACACCCTCAGgtctctcctc ... tctcttgcagATTTTGATTGGTAGCTGTGTTCGTAGCAATAACAGCCTGGCAGAGAATCTT
EST: TGCAGTTCCTGTTGCCTTTGCCCTGCGCCCCATCAGGAGCACACCCTCAG ATTTTGATTGGTAGCTGTGTTCGTAGCAATAACAGCCTGGCAGAGAATCTTEST: gi|88425781|gb|CI571681.1|CI571681
genomic: TGCAGTTCCTGTTGCCTTTGCCCTGCGCCCCATCAGGAGCACACCCTCAGgtctctcctc ... tctcttgcagATTTTGATTGGTAGCTGTGTTCGTAGCAATAACAGCCTGGCAGAGAATCTT
EST: TGCAGTTCCTGTTGCCTTTGCCCTGCGCCCCATCAGGAGCACACCCTCAG ATTTTGATTGGTAGCTGTGTTCGTAGCAATAACAGCCTGGCAGAGAATCTTEST: gi|33677645|gb|CF305884.1|CF305884
genomic: TGCAGTTCCTGTTGCCTTTGCCCTGCGCCCCATCAGGAGCACACCCTCAGgtctctcctc ... tctcttgcagATTTTGATTGGTAGCTGTGTTCGTAGCAATAACAGCCTGGCAGAGAATCTT
EST: TGCAGTTCCTGTTGCCTTTGCCCTGCGCCCCATCAGGAGCACACCCTCAG ATTTTGATTGGTAGCTGTGTTCGTAGCAATAACAGCCTGGCAGAGAATCTTEST: gi|1438555|gb|U60305.1|U60305
genomic: TGCAGTTCCTGTTGCCTTTGCCCTGCGCCCCATCAGGAGCACACCCTCAGgtctctcctc ... tctcttgcagATTTTGATTGGTAGCTGTGTTCGTAGCAATAACAGCCTGGCAGAGAATCTT
EST: TGCAGTTCCTGTTGCCTTTGCCCTGCGCCCCATCAGGAGCACACCCTCAG ATTTTGATTGGTAGCTGTGTTCGTAGCAATAACAGCCTGGCAGAGAATCTTEST: gi|4881153|gb|AU065452.1|AU065452
genomic: TGCAGTTCCTGTTGCCTTTGCCCTGCGCCCCATCAGGAGCACACCCTCAGgtctctcctc ... tctcttgcagATTTTGATTGGTAGCTGTGTTCGTAGCAATAACAGCCTGGCAGAGAATCTT
EST: GTTCCTGTTGCCTTTGCCCTGCGCCCCATCAGGAGCACACCCTCAG ATTTTGATTGGTAGCTGTGTTCGTAGCAATAACAGCCTGGCAGAGAATCTT
genomic: GTTCCTGTTGCCTTTGCCCTGCGCCCCATCAGGAGCACACCCTCAGgtctctcctc ... tctcttgcagATTTTGATTGGTAGCTGTGTTCGTAGCAATAACAGCCTGGCAGAGAATCTT
aaaagaatttgtttagactgacaaacaggctgctaagtaagttcatctcttgcagATTTTGATTGGTAGCTGTGTTCGTAGCAATAACAGCCTGGCAGAGAATCTTTGAGAAGTTGCAGTCTATTAGTTCAACAAG
gactgac putative branch site (score: 2)
ttcatctctt putative PPT
aatttgttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttggagttttctctttggctctactctctaaaaatctagctatgaaaaagaatttgtttagactgacaaacaggctgctaagtaagttcatctcttgcagATTTTGATTGGTAGCTGTGTTCGTAGCAATAACAGCCTGGCAGAGAATCTTTGAGAAGTTGCAGTCTATTAGTTCAACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - -aaaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctgcta