1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaagtcctttgcttccatttaagctgtctgacagtaacattttatttagatttcacattcaacattttgctaactgctgctgttgtgcctttacagCCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTCCCACAAGGCTGTGAATGAATACAAGGAGGCTAAGGCG
species | Oryza sativa |
transcript | LOC_Os12g42876.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTA CCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTCEST: gi|29637454|gb|CB642463.1|CB642463
genomic: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTAgtaagtcctt ... gcctttacagCCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
EST: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTA CCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTCEST: gi|58663725|gb|CK052411.1|CK052411
genomic: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTAgtaagtcctt ... gcctttacagCCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
EST: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTA CCACTTTATTGTCCCTGAACTTGGTCCTAACACCAATTTCTCCTACTCTTCEST: gi|58692606|gb|CK081293.1|CK081293
genomic: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTAgtaagtcctt ... gcctttacagCCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
EST: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTA CCACTTTATTGTCCCTGAACTTGGTCCTAACACCAATTTCTCCTACTCTTCEST: gi|29631738|gb|CB636747.1|CB636747
genomic: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTAgtaagtcctt ... gcctttacagCCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
EST: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTA CCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTCEST: gi|58606784|gb|CK034817.1|CK034817
genomic: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTAgtaagtcctt ... gcctttacagCCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
EST: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTA ACACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTCEST: gi|58693681|gb|CK082368.1|CK082368
genomic: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTAgtaagtcctt ... gcctttacagCCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
EST: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTA CCACTTTATTGTCCCTGAACTTGGTCCTAACACCAATTTCTCCTACTCTTCEST: gi|29657687|gb|CB653962.1|CB653962
genomic: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTAgtaagtcctt ... gcctttacagCCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
EST: AATGCCACTGTCCCTGCTATGGAGATGACCAAGTGGTTTGACACCAACTA CCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTCEST: gi|58672742|gb|CK061428.1|CK061428
genomic: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTAgtaagtcctt ... gcctttacagCCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
EST: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTA CCACTTTATTGTCCCTGAACTTGGTCCTAACACCAATTTCTCCTACTCTTCEST: gi|29622989|gb|CB628000.1|CB628000
genomic: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTAgtaagtcctt ... gcctttacagCCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
EST: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTA CCACTTTATTGTCCCTGAACTTGGTCCTAACACCAATTTCTCCTACTCTTCEST: gi|33798694|gb|CF325205.1|CF325205
genomic: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTAgtaagtcctt ... gcctttacagCCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
EST: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTA CCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTCEST: gi|88377660|gb|CI605495.1|CI605495
genomic: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTAgtaagtcctt ... gcctttacagCCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
EST: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTA CCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTTCTACTCTTCEST: gi|58606439|gb|CK034472.1|CK034472
genomic: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTAgtaagtcctt ... gcctttacagCCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
EST: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTA CCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTCEST: gi|58674086|gb|CK062772.1|CK062772
genomic: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTAgtaagtcctt ... gcctttacagCCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
EST: AATGCCACTGTCCCTGCTATGGAGATGACCAAGTGGTTTGACACCAACTA CCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTCEST: gi|58662489|gb|CK051175.1|CK051175
genomic: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTAgtaagtcctt ... gcctttacagCCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
EST: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTA CCACTTTATTGTCCCTGAACTTGGTCCTAACACCAATTTCTCCTACTCTTCEST: gi|58662730|gb|CK051416.1|CK051416
genomic: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTAgtaagtcctt ... gcctttacagCCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
EST: AATGCCACTGTCCCCGCCATGGAGATGACCAAGTGGTTTGACACCAACTA CCACTTTATTGTCCCTGAACTTGGTCCTAACACCAATTTCTCCTACTCTTCEST: gi|13806667|gb|AU181625.1|AU181625
genomic: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTAgtaagtcctt ... gcctttacagCCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
EST: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTA CCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTTCTACTCTTCEST: gi|58586228|gb|CF984536.1|CF984536
genomic: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTAgtaagtcctt ... gcctttacagCCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
EST: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTA CCACTTTATTGTCCCTGAACTTGGTCCTAACACCAATTTCTCCTACTCTTCEST: gi|58667161|gb|CK055847.1|CK055847
genomic: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTAgtaagtcctt ... gcctttacagCCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
EST: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTA CCACTTTATTGTCCCTGAACTTGGTCCTAACACCAATTTCTCCTACTCTTCEST: gi|58597101|gb|CK007629.1|CK007629
genomic: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTAgtaagtcctt ... gcctttacagCCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
EST: AATGCCACTGTCCCTGCTATGGAGATGACCAAGTGGTTTGACACCAACTA CCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTCEST: gi|58591916|gb|CF990224.1|CF990224
genomic: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTAgtaagtcctt ... gcctttacagCCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
EST: AATGCCACTGTCCCTGCTATGGAGATGACCAAGTGGTTTGACACCAACTA CCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTCEST: gi|88360093|gb|CI610207.1|CI610207
genomic: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTAgtaagtcctt ... gcctttacagCCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
EST: AATGCCACTGTCCCTGCTATGGAGATGACCAAGTGGTTTGACACCAACTA CCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTCEST: gi|29629761|gb|CB634770.1|CB634770
genomic: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTAgtaagtcctt ... gcctttacagCCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
EST: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTA CCACTTTATTGTCCCTGAACTTGGTCCTAACACCAATTTCTCCTACTCTTCEST: gi|29632460|gb|CB637469.1|CB637469
genomic: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTAgtaagtcctt ... gcctttacagCCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
EST: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTA CCACTTTATCGTTCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTCEST: gi|58664322|gb|CK053008.1|CK053008
genomic: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTAgtaagtcctt ... gcctttacagCCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
EST: GTGGTTTGACACCAACTA CCACTTTATTGTCCCTGAACTTGGTCCTAACACCAATTTCTCCTACTCTTCEST: gi|145758276|gb|ES351708.1|ES351708
genomic: GTGGTTTGACACCAACTAgtaagtcctt ... gcctttacagCCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
EST: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTA CCACTTTATTGTCCCTGAACTTGGTCCTAACACCAATTTCTCCTACTCTTCEST: gi|58598413|gb|CK008941.1|CK008941
genomic: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTAgtaagtcctt ... gcctttacagCCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
EST: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTA CCACTTTATTGTCCCTGAACTTGGTCCTAACACCAATTTCTCCTACTCTTCEST: gi|58670927|gb|CK059613.1|CK059613
genomic: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTAgtaagtcctt ... gcctttacagCCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
EST: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTA CCACTTTATTGTCCCTGAACTTGGTCCTAACACCAATTTCTCCTACTCTTCEST: gi|58672843|gb|CK061529.1|CK061529
genomic: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTAgtaagtcctt ... gcctttacagCCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
EST: AATGCCACTGTCCCTGCTATGGAGATGACCAAGTGGTTTGACACCAACTA CCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTCEST: gi|58664010|gb|CK052696.1|CK052696
genomic: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTAgtaagtcctt ... gcctttacagCCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
EST: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTA CCACTTTATTGTCCCTGAACTTGGTCCTAACACCAATTTCTCCTACTCTTCEST: gi|58668480|gb|CK057166.1|CK057166
genomic: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTAgtaagtcctt ... gcctttacagCCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
EST: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTA CCACTTTATTGTCCCTGAACTTGGTCCTAACACCAATTTCTCEST: gi|58658015|gb|CK046695.1|CK046695
genomic: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTAgtaagtcctt ... gcctttacagCCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTC
EST: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTA CCACTTTATTGTCCCTGAACTTGGTCCTAACACCAATTTCTCCTACTCTTCEST: gi|58662412|gb|CK051098.1|CK051098
genomic: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTAgtaagtcctt ... gcctttacagCCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
EST: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTA CCACTTTATTGTCCCTGAACTTGGTCCTAACACCAATTTCTCCTACTCTTCEST: gi|11026095|gb|AU162696.1|AU162696
genomic: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTAgtaagtcctt ... gcctttacagCCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
EST: TGCCACTGTCCCTGGCCATGGAGATGACCAAGTGGTTTGGACACCAACTA CCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTCEST: gi|58673804|gb|CK062490.1|CK062490
genomic: TGCCACTGTCCCTG-CCATGGAGATGACCAAGTGGTTTG-ACACCAACTAgtaagtcctt ... gcctttacagCCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
EST: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTA CCACTTTATTGTCCCTGAACTTGGTCCTAACACCAATTTCTCCTACTCTTC
genomic: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTAgtaagtcctt ... gcctttacagCCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
ttatttagatttcacattcaacattttgctaactgctgctgttgtgcctttacagCCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTCCCACAAGGCTGTGAATGAATACAAGGAGGCTAAGGCG
tgctaac putative branch site (score: 231)
tgccttt putative PPT
aacatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtcctttgcttccatttaagctgtctgacagtaacattttatttagatttcacattcaacattttgctaactgctgctgttgtgcctttacagCCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTCCCACAAGGCTGTGAATGAATACAAGGAGGCTAAGGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG