1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaacgtaccccaagtcctctccccgtcatttttagctaaggtttgattatccatctatccatcgatcgattttaatttgtttcttgcggttgtttttgtgcagACAAGAAGGCCTTCCCTGACTTGTCCGTTCTCGGGTGGTACTCCATTGGGACCAATGTGCACGCCACCGACACGGGAATCCACCATGGGGACTACACCGA
species | Oryza sativa |
transcript | LOC_Os12g42810.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGACCCCGGAACCTTCGACCGCGCCTTACTGGAGAAGGATCAGGAGATCT ACAAGAAGGCCTTCCCTGACTTGTCCGTTCTCGGGTGGTA
genomic: CGACCCCGGAACCTTCGACCGCGCCTTACTGGAGAAGGATCAGGAGATCTgtaacgtacc ... ttttgtgcagACAAGAAGGCCTTCCCTGACTTGTCCGTTCTCGGGTGGTA
atccatctatccatcgatcgattttaatttgtttcttgcggttgtttttgtgcagACAAGAAGGCCTTCCCTGACTTGTCCGTTCTCGGGTGGTACTCCATTGGGACCAATGTGCACGCCACCGACACGGGAATCCACCATGGGGACTACACCGA
ttttaat putative branch site (score: 7)
ttgttttt putative PPT
attttaatttgtttct TA-rich tract