1 5' 3' | 2 5' 3' | 3 5' 3' |
...taccttcttgatgtaaccaggaggagaatcgtatcctggttgtgtttttaatgctctgtgaagcaagctgtgttattaactagtataaatgttatctcagTGCCTAGGAACTTCAGACTGCTAGAAGAGCTTGAGAGAGGGGAGAAGGGCATCGGTGATGGATCAGTAAGCTATGGAATGGATGATGCAGACGATATCTA
species | Oryza sativa |
transcript | LOC_Os12g41220.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTGCGCTCAGCTGGGATGGCGTCGAGTGGAGATCCCATCGGCAGTCGTCG TGCCTAGGAACTTCAGACTGCTAGAAGAGCTTGAGAGCAGGGGAGAAGGGCEST: gi|88349269|gb|CI678245.1|CI678245
genomic: CTGCGCTCAGCTGGGATGGCGTCGAGTGGAGAT-CCATCGGCAGTCGTCGgtaagcctag ... gttatctcagTGCCTAGGAACTTCAGACTGCTAGAAGAGCTTGAGAG-AGGGGAGAAGGGC
EST: CCTGCGCTCAGCTGGGATGGCGTCGAGTGGAGATCCATCGGCAGTCGTCG TGCCTAGGAACTTCAGACTGCTAGAAGAGCTTGAGAGAGGGGAGAAGGGCAEST: gi|88735525|gb|CI759033.1|CI759033
genomic: CCTGCGCTCAGCTGGGATGGCGTCGAGTGGAGATCCATCGGCAGTCGTCGgtaagcctag ... gttatctcagTGCCTAGGAACTTCAGACTGCTAGAAGAGCTTGAGAGAGGGGAGAAGGGCA
EST: CCTGCGCTCAGCTGGGATGGCGTCGAGTGGAGATCCATCGGCAGTCGTCG TGCCTAGGAACTTCAGACTGCTAGAAGAGCTTGAGAGAGGGGAGAAGGGCAEST: gi|87036157|gb|CI189604.1|CI189604
genomic: CCTGCGCTCAGCTGGGATGGCGTCGAGTGGAGATCCATCGGCAGTCGTCGgtaagcctag ... gttatctcagTGCCTAGGAACTTCAGACTGCTAGAAGAGCTTGAGAGAGGGGAGAAGGGCA
EST: CGGCAGTCGTCG TGCCTAGGAACTTCAGACTGCTAGAAGAGCTTGAGAGAGGGGAGAAGGGCA
genomic: CGGCAGTCGTCGgtaagcctag ... gttatctcagTGCCTAGGAACTTCAGACTGCTAGAAGAGCTTGAGAGAGGGGAGAAGGGCA
ttttaatgctctgtgaagcaagctgtgttattaactagtataaatgttatctcagTGCCTAGGAACTTCAGACTGCTAGAAGAGCTTGAGAGAGGGGAGAAGGGCATCGGTGATGGATCAGTAAGCTATGGAATGGATGATGCAGACGATATCTA
tattaac putative branch site (score: 68)
ttatctc putative PPT
ttattaactagtataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taccttcttgatgtaaccaggaggagaatcgtatcctggttgtgtttttaatgctctgtgaagcaagctgtgttattaactagtataaatgttatctcagTGCCTAGGAACTTCAGACTGCTAGAAGAGCTTGAGAGAGGGGAGAAGGGCATCGGTGATGGATCAGTAAGCTATGGAATGGATGATGCAGACGATATCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - cttgatg
- - - - - - - - - - - - - - - - - -ctggttg
- - - - - - - - - - - - - - - - - - - - - - - - - -tgctctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agcaagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgtta