1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aattttacttgttggttgttttatttctcaacctcccattaattgctcccagttaaggtattttcagttggaacattagttatgatttgtacaatcacagATGGGATTTACAGATGAAATAGTACAAGTAGATGTGTTAGAAAGGCACTTGTTGGCTGGTTTATCACCGGATGATTATAAGGGAATAAGTGAGGATGAGA
species | Oryza sativa |
transcript | LOC_Os12g38480.3 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATCGCCGCCGGCGCCGAATTCCGCCGCGATCTCGCCTGCTCCCCCCAGTG ATGGGATTTACAGATGAAATAGTACAAGTAGATGTGTTAGAAAGGCACTTGEST: gi|58683093|gb|CK071780.1|CK071780
genomic: ATCGCCGCCGGCGCCGAATTCCGCCGCGATCTCGCCTGCTCCCCCCAGTGgtaagagatt ... acaatcacagATGGGATTTACAGATGAAATAGTACAAGTAGATGTGTTAGAAAGGCACTTG
EST: ATCGCCGCCGGCGCCGAATTCCGCCGCGATCTCGCCTGCTCCCCCCAGTG ATGGGATTTACAGATGAAATAGTACAAGTAGATGTGTTAGAAAGGCACTTG
genomic: ATCGCCGCCGGCGCCGAATTCCGCCGCGATCTCGCCTGCTCCCCCCAGTGgtaagagatt ... acaatcacagATGGGATTTACAGATGAAATAGTACAAGTAGATGTGTTAGAAAGGCACTTG
ctcccagttaaggtattttcagttggaacattagttatgatttgtacaatcacagATGGGATTTACAGATGAAATAGTACAAGTAGATGTGTTAGAAAGGCACTTGTTGGCTGGTTTATCACCGGATGATTATAAGGGAATAAGTGAGGATGAGA
attagttatgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aattttacttgttggttgttttatttctcaacctcccattaattgctcccagttaaggtattttcagttggaacattagttatgatttgtacaatcacagATGGGATTTACAGATGAAATAGTACAAGTAGATGTGTTAGAAAGGCACTTGTTGGCTGGTTTATCACCGGATGATTATAAGGGAATAAGTGAGGATGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - -cttgttg
- - - - - - - gttgttt
- - - - - - - - - - - - - - - -cctccca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttatgat