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...agttttgatatattcttgactgcattagcttttgttctgcagtagtttgtgtttaatagtgccgcaatccatgactaatttgaactgtactttttcttagGTCACGGAATCAACTGATTTCACAGAGCTCGTCAACCAAGAGCCATGGCTCTCGTCTATGAAGTTGGTTGTGAAACCCGACATGCTGTTTGGCAAACGTG
species | Oryza sativa |
transcript | LOC_Os12g37870.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGCACCTCAAGCGCCTCGCCGCCATCGACCTCCACATCCTCTCCGCCCAG GTCACGGAATCAACTGATTTCACAGAGCTCGTCAACCAAGAGCCATGGCTCEST: gi|569539|gb|D40388.1|D40388
genomic: AGCACCTCAAGCGCCTCGCCGCCATCGACCTCCACATCCTCTCCGCCCAGgtacaccaca ... tttttcttagGTCACGGAATCAACTGATTTCACAGAGCTCGTCAACCAAGAGCCATGGCTC
EST: AGCACCTCAAGCGCCTCGCCGCCATCGACCTCCACATCCTCTCCGCCCAG GTCACGGAATCAACTGATTTCACAGAGCTCGTCAACCAAGAGCCATGGCTCEST: gi|3090568|gb|C93555.1|C93555
genomic: AGCACCTCAAGCGCCTCGCCGCCATCGACCTCCACATCCTCTCCGCCCAGgtacaccaca ... tttttcttagGTCACGGAATCAACTGATTTCACAGAGCTCGTCAACCAAGAGCCATGGCTC
EST: AGCACCTCAAGCGCCTCGCCGCCATCGACCTCCACATCCTCTCCGCCCAG GTCACGGAATCAACTGATTTCACAGAGCTCGTCAACCAAGAGCCATGGCTCEST: gi|33676456|gb|CF304695.1|CF304695
genomic: AGCACCTCAAGCGCCTCGCCGCCATCGACCTCCACATCCTCTCCGCCCAGgtacaccaca ... tttttcttagGTCACGGAATCAACTGATTTCACAGAGCTCGTCAACCAAGAGCCATGGCTC
EST: CTCAAGCGCCTCGCCGCCATCGACCTCCACATCCTCTCCGCCCAG GTCACGGAATCAACTGATTTCACAGAGCTCGTCAACCAAGAGCCATGGCTC
genomic: CTCAAGCGCCTCGCCGCCATCGACCTCCACATCCTCTCCGCCCAGgtacaccaca ... tttttcttagGTCACGGAATCAACTGATTTCACAGAGCTCGTCAACCAAGAGCCATGGCTC
tttgtgtttaatagtgccgcaatccatgactaatttgaactgtactttttcttagGTCACGGAATCAACTGATTTCACAGAGCTCGTCAACCAAGAGCCATGGCTCTCGTCTATGAAGTTGGTTGTGAAACCCGACATGCTGTTTGGCAAACGTG
gactaat putative branch site (score: 35)
ctgtactttttctt putative PPT
tttaatagt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agttttgatatattcttgactgcattagcttttgttctgcagtagtttgtgtttaatagtgccgcaatccatgactaatttgaactgtactttttcttagGTCACGGAATCAACTGATTTCACAGAGCTCGTCAACCAAGAGCCATGGCTCTCGTCTATGAAGTTGGTTGTGAAACCCGACATGCTGTTTGGCAAACGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - -gactgca
- - - - - - - - - - - - - - - - - ttctgca
- - - - - - - - - - - - - - - - - - - - - - - ttgtgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgccgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atccatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgaactg