1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgagctgattcgtgatgcgtgtgcatatttgattgatagtttgtttccttgtttgggtgaagaggttttggtgattgatttggtcttgtttttgttggcagCAACAACATACTGTATCCCAAGGAGGATAGGGACCAGAAGATTCTGCTCTATGCCTGCAGGAACTGTGACCACCAG
species | Oryza sativa |
transcript | LOC_Os12g37370.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCAGAGGAGAAGCTAGCAGCCATGAGTACCATGAAATTTTGCCGCGAATG CAACAACATACTGTATCCCAAGGAGGATAGGGACCAGAAGATTCTGCTCTAEST: gi|112787231|gb|EE592303.1|EE592303
genomic: TCAGAGGAGAAGCTAGCAGCCATGAGTACCATGAAATTTTGCCGCGAATGgtgagctgat ... ttgttggcagCAACAACATACTGTATCCCAAGGAGGATAGGGACCAGAAGATTCTGCTCTA
EST: TCAGAGGAGAAGCTAGCAGCCATGAGTACCATGAAATTTTGGCGCGAATG CAACAACATACTGTATCCCAAGGAGGATAGGGACCAGAAGATTCTGCTCTAEST: gi|88584285|gb|CI701828.1|CI701828
genomic: TCAGAGGAGAAGCTAGCAGCCATGAGTACCATGAAATTTTGCCGCGAATGgtgagctgat ... ttgttggcagCAACAACATACTGTATCCCAAGGAGGATAGGGACCAGAAGATTCTGCTCTA
EST: TCAGAGGAGAAGCTAGCAGCCATGAGTACCATGAAATTTTGCCGCGAATG CAACAACATACTGTATCCCAAGGAGGATAGGGACCAGAAGATTCTGCTCTAEST: gi|33814350|gb|CF333047.1|CF333047
genomic: TCAGAGGAGAAGCTAGCAGCCATGAGTACCATGAAATTTTGCCGCGAATGgtgagctgat ... ttgttggcagCAACAACATACTGTATCCCAAGGAGGATAGGGACCAGAAGATTCTGCTCTA
EST: TCAGAGGAGAAGCTAGCAGCCATGAGTACCATGAAATTTTGCCGCGAATG CAACAACATACTGTATCCCAAGGAGGATAGGGACCAGAAGATTCTGCTCTAEST: gi|86906467|gb|CI294590.1|CI294590
genomic: TCAGAGGAGAAGCTAGCAGCCATGAGTACCATGAAATTTTGCCGCGAATGgtgagctgat ... ttgttggcagCAACAACATACTGTATCCCAAGGAGGATAGGGACCAGAAGATTCTGCTCTA
EST: TTTGCCGCGAATG CAACAACATACTGTATCCCAAGGAGGATAGGGACCAGAAGATTCTGCTCTAEST: gi|58591666|gb|CF989974.1|CF989974
genomic: TTTGCCGCGAATGgtgagctgat ... ttgttggcagCAACAACATACTGTATCCCAAGGAGGATAGGGACCAGAAGATTCTGCTCTA
EST: TCAGAGGAGAAGCTAGCAGCCATGAGTACCATGAAATTTTGCCGCGAATG CAACAACATACTGTATCCCAAGGAGGATAGGGACCAGAAGATTCTGCTCTA
genomic: TCAGAGGAGAAGCTAGCAGCCATGAGTACCATGAAATTTTGCCGCGAATGgtgagctgat ... ttgttggcagCAACAACATACTGTATCCCAAGGAGGATAGGGACCAGAAGATTCTGCTCTA
ccttgtttgggtgaagaggttttggtgattgatttggtcttgtttttgttggcagCAACAACATACTGTATCCCAAGGAGGATAGGGACCAGAAGATTCTGCTCTATGCCTGCAGGAACTGTGACCACCAG
gattgat putative branch site (score: 6)
tcttgttttt putative PPT
attgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagctgattcgtgatgcgtgtgcatatttgattgatagtttgtttccttgtttgggtgaagaggttttggtgattgatttggtcttgtttttgttggcagCAACAACATACTGTATCCCAAGGAGGATAGGGACCAGAAGATTCTGCTCTATGCCTGCAGGAACTGTGACCACCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG