1 5' 3' | 2 5' 3' | 3 5' 3' |
gtacgcgcggtaaacgagcgtgtgcttcgagtccggtactttggatctgacttggatttgactcactgaactgaaccacccctccggtagGCGCCGCGGATGTGCTGCCGTTCGTGGAGGCGGACCTGAAGAAGAGCTCCATGCGCGTCATCGAGAAGGCCAGGGAGCTCTGCGCCCAG
species | Oryza sativa |
transcript | LOC_Os12g36640.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGTCAACGCCAAGCCCACCGCCGCCTCCGCCGTCGGCCTCGCCGGCCCAG GCGCCGCGGATGTGCTGCCGTTCGTGGAGGCGGACCTGAAGAAGAGCTCCAEST: gi|218498665|gb|FG952674.1|FG952674
genomic: CGTCAACGCCAAGCCCACCGCCGCCTCCGCCGTCGGCCTCGCCGGCCCAGgtacgcgcgg ... cctccggtagGCGCCGCGGATGTGCTGCCGTTCGTGGAGGCGGACCTGAAGAAGAGCTCCA
EST: CGTCAACGCCAAGCCCACCGCCGCCTCCGCCGTCGGCCTCGCCGGCCCAG GCGCCGCGGATGTGCTGCCGTTCGTGGAGGCGGACCTGAAGAAGAGCTCCAEST: gi|8860142|gb|AU097460.1|AU097460
genomic: CGTCAACGCCAAGCCCACCGCCGCCTCCGCCGTCGGCCTCGCCGGCCCAGgtacgcgcgg ... cctccggtagGCGCCGCGGATGTGCTGCCGTTCGTGGAGGCGGACCTGAAGAAGAGCTCCA
EST: TCCGCCGTC-GCNTCGCCGGCCCAG GCNCCGCGGATGTGCTGCCGTTCGTGGAGGCGGACCTGAAGAAGAGCTCCA
genomic: TCCGCCGTCGGCCTCGCCGGCCCAGgtacgcgcgg ... cctccggtagGCGCCGCGGATGTGCTGCCGTTCGTGGAGGCGGACCTGAAGAAGAGCTCCA
gtactttggatctgacttggatttgactcactgaactgaaccacccctccggtagGCGCCGCGGATGTGCTGCCGTTCGTGGAGGCGGACCTGAAGAAGAGCTCCATGCGCGTCATCGAGAAGGCCAGGGAGCTCTGCGCCCAG
gactcac putative branch site (score: 112)
ccacccctcc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgcgcggtaaacgagcgtgtgcttcgagtccggtactttggatctgacttggatttgactcactgaactgaaccacccctccggtagGCGCCGCGGATGTGCTGCCGTTCGTGGAGGCGGACCTGAAGAAGAGCTCCATGCGCGTCATCGAGAAGGCCAGGGAGCTCTGCGCCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT