1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaaacgagcgtgtgcttcgagtccggtactttggatctgacttggatttgactcactgaactgaaccacccctccggtagGCGCCGCGGATGTGCTGCCGTTCGTGGAGGCGGACCTGAAGAAGAGCTCCATGCGCGTCATCGAGAAGGCCAGGGAGCTCTGCGCCCAG
species | Oryza sativa |
transcript | LOC_Os12g36640.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CAAGCCCACCGCCGCCTCCGCCGTCGGCCTCGCCGGCCC----A-----G GCGCCGCGGATGTGCTGCCGTTCGTGGAGGCGGACCTGAAGAAGAGCTCCAEST: gi|29623326|gb|CB628337.1|CB628337
genomic: CAAGCCCACCGCCGCCTCCGCCGTCGGCCTCGCCGGCCCAGGTACGCGCGgtaaacgagc ... cctccggtagGCGCCGCGGATGTGCTGCCGTTCGTGGAGGCGGACCTGAAGAAGAGCTCCA
EST: CAAGCCCACCGCCGCCTCCGCCGTCGGCCTCGCCGGCCC----A-----G GCGCCGCGGATGTGCTGCCGTTCGTGGAGGCGGACCTGAAGAAGAGCTCCA
genomic: CAAGCCCACCGCCGCCTCCGCCGTCGGCCTCGCCGGCCCAGGTACGCGCGgtaaacgagc ... cctccggtagGCGCCGCGGATGTGCTGCCGTTCGTGGAGGCGGACCTGAAGAAGAGCTCCA
gtactttggatctgacttggatttgactcactgaactgaaccacccctccggtagGCGCCGCGGATGTGCTGCCGTTCGTGGAGGCGGACCTGAAGAAGAGCTCCATGCGCGTCATCGAGAAGGCCAGGGAGCTCTGCGCCCAG
gactcac putative branch site (score: 2)
ccacccctcc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaacgagcgtgtgcttcgagtccggtactttggatctgacttggatttgactcactgaactgaaccacccctccggtagGCGCCGCGGATGTGCTGCCGTTCGTGGAGGCGGACCTGAAGAAGAGCTCCATGCGCGTCATCGAGAAGGCCAGGGAGCTCTGCGCCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT