Sequence
atgc intronic sequence ATGC exonic sequencegtgcgtgcgcccgccgccgccctccaaaccctagcttaatgcttgtttcccgattctaagtactggattttggtttgcttgctcgccctcactctgtgtgtgtgtgcagGGATTTGAACGAGATACTGGATTTGTACGAGAAGGGGGAGAAGTTCTACCTCTACACGGGGAGGGGGCCCTCGTCGGAGGCGCTGCACCTCGGCCATCTC
Basic information
species | Oryza sativa |
transcript | LOC_Os12g35570.3 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os12g35570.2 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G002687_T01 (Zea mays), 3'ss of exon 1
gtgcgtgcgcccgccgccgccctccaaaccctagcttaatgcttgtttcccgattctaagtactggattttggtttgcttgctcgccctcactctgtgtgtgtgtgcagGGATTTGAACGAGATACTGGATTTGTACGAGAAGGGGGAGAAGTTCTACCTCTACACGGGGAGGGGGCCCTCGTCGGAGGCGCTGCACCTCGGCCATCTC
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--------gtaccgagccacccgcaaaaaaaaaaggccctagttttttttatccccgtaggaggacgtgctgacgaatttttgtgtgcttttcttatgt-----tatagTGATTTGAACGAGATACTGGATTTGTATGAGAACGGGCAGAAGTTCTACCTCTACACGGGGAGGGGGCCCTCGTCGGAGGCCCTGCACCTCGGCCACCTCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|117242702|gb|CT843523.1|CT843523EST: TTCTTCGCCCACCG GGATTTGAACGAGATACTGGATTTGTACGAGAAGGGGGAGAAGTTCTACCT
genomic: TTCTTCGCCCACCGgtgcgtgcgc ... gtgtgtgcagGGATTTGAACGAGATACTGGATTTGTACGAGAAGGGGGAGAAGTTCTACCT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tctaagtactggattttggtttgcttgctcgccctcactctgtgtgtgtgtgcagGGATTTGAACGAGATACTGGATTTGTACGAGAAGGGGGAGAAGTTCTACCTCTACACGGGGAGGGGGCCCTCGTCGGAGGCGCTGCACCTCGGCCATCTC
ccctcac putative branch site (score: 3)
atttt TA-rich tract